Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq101539 118 7e-22 seq100029 107 1e-18 seq91609 102 5e-17 seq78223 98.7 6e-16 seq21431 96.9 2e-15 seq13002 96.9 2e-15 seq97783 89.7 3e-13 seq25263 84.2 1e-11 >seq101539 Length=5526 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | |||||||| | || || ||||| ||||| ||||| | | Sbjct 2406 CCACCCCTCAATCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 2465 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| ||||||||||| || || | ||||||||| | || Sbjct 2466 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 2525 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||||| || ||| | || | ||| | |||||| Sbjct 2526 ATGCCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACC 2585 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||||||||| ||||| ||||| ||||| || |||||||||||| Sbjct 2586 TCTAGGGTTATGGTCTTTCCTGTGAGCGTCTTGACGAAGATCTGCATA 2633 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | ||||| |||| || || ||||| ||||| ||||| | | Sbjct 2634 CCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2693 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || ||||| || || | ||||||||| | || Sbjct 2694 AGAGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 2753 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| |||||| | || | || | ||| || Sbjct 2754 ATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACC 2813 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 2814 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 2860 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | |||| ||||| || || ||||| ||||| ||||| | | Sbjct 3092 CCTCCCCTAAGGCGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 3151 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||||||||| ||||| || || | |||||||||| | || Sbjct 3152 AGGGTACGGCCATCCTCGAGCTGTTTTCCAGCAAAGATGAGCCTTTGCTGGTCTGGGGGG 3211 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||||| ||||| || | ||||| || | ||| Sbjct 3212 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTC 3267 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| || || || || ||||| || ||||||||||||||||| Sbjct 3268 GACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 3318 >seq100029 Length=1069 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | |||| | || |||| || ||||| ||||| ||||| Sbjct 578 TCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAA 519 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | |||||||| || ||||| || ||| Sbjct 518 ATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTAACGTTG 459 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | ||||||||| ||||| ||||| ||||| || Sbjct 458 TCAATGGTGTCAGAGCTCTCAACCTCTAGGGTTATGGTCTTTCCTGTGAGCGTCTTGACG 399 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 398 AAGATCTGCATA 387 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | ||||| |||| || || ||||| ||||| ||||| | | Sbjct 386 CCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 327 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || || || || || | ||||||||| | || Sbjct 326 AGAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGG 267 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| |||||| | || | || | ||| || Sbjct 266 ATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACC 207 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 206 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 160 >seq91609 Length=4479 Score = 102 bits (112), Expect = 5e-17 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||| ||||||||||||| |||| || | || || ||||| ||||| ||||| | Sbjct 244 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 185 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 |||| | || | || |||||||| ||||| || || || || || |||||||| |||| Sbjct 184 AAGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 125 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCT 34929 | ||||||||||| ||||| || || || | ||||| | ||| | | Sbjct 124 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT--TGTCGATCGTGTCCGAAGATT 69 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || | ||| || |||||||| || || || || |||||||||||||| || Sbjct 68 CCACCTCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCATTTT 14 >seq78223 Length=3817 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || |||||||||||||||||||| | ||| | || |||| || Sbjct 2239 ACCAAGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGCAAGAGTGCGACCATCCTCG 2298 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || |||| |||||||||| | || | || ||||| || Sbjct 2299 AGCTGCTTGCCGGCAAAGATAAGTCTTTGCTGGTCTGGGGGGATGCCTTCCTTATCTTGG 2358 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | || || || | ||| || || || Sbjct 2359 ATCTTGGCCTTAACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTGATTGTCTTG 2418 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || ||||||||||||||||| Sbjct 2419 CCAGTGAGGGTTTTCACAAAGATCTGCAT 2447 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| | || | | ||||||||| | || || ||||||||||| || || | Sbjct 1992 TCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGC 2051 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || |||| |||| |||| ||| ||||||||||| || | | ||||| || | || Sbjct 2052 CAGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGG 2111 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCT 34929 | ||| ||||| || |||||| ||| || || |||| || || | || Sbjct 2112 GATCCCTTCCTTATCTTGAATCTTTGCTTTCAC--AT--TATCAATGGTGTCGGAGCTCT 2167 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | ||| ||||| ||||| || | ||||| ||||| |||||||| Sbjct 2168 CAACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 >seq21431 Length=3066 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | |||| | || |||| || ||||| || || || || Sbjct 350 TCCTTCTGGATATTGTAGTCGGCAAGGGTACGCCCATCTTCAAGCTGCTTACCAGCGAAG 291 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | || |||||||| |||||| |||||| Sbjct 290 ATGAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTG 231 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| ||||| ||||| |||||||| Sbjct 230 TCAATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACG 171 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 170 AAGATCTGCAT 160 >seq13002 Length=8172 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||| ||||||||||||| |||| || | || || ||||| ||||| ||||| | Sbjct 5185 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 5126 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | ||| | || |||||||| ||||| || || || || || |||||||| |||| Sbjct 5125 GAGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 5066 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCT 34929 | ||||||||||| ||||| ||||| | | ||||| | ||| | || Sbjct 5065 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC----GTTGTCGATGGTGTCCGACGACT 5010 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | ||| || || || ||||| || || ||||| || |||||||| Sbjct 5009 CCACCTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCAT 4958 >seq97783 Length=4057 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || |||||||| ||||| ||||| | |||| | || | || || Sbjct 847 ACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCG 906 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || | ||||||||| | || | || |||||||| Sbjct 907 AGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGG 966 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || | ||| || || | ||| || || Sbjct 967 ATCTTAGCCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGT 1022 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| || ||||||||||||||||| Sbjct 1023 CTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1055 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | ||| |||| || || || || || ||||| Sbjct 637 TCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGTCCATCCTCAAGTTGCTTCCCTGCAAAG 696 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | |||||||| || ||||||| |||||| Sbjct 697 ATAAGCCTCTGCTGATCCGGAGGTATACCCTCCTTATCTTGAATCTTCGCCTTGACGTTG 756 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| || | || ||||| ||||||||||| || ||||| Sbjct 757 TCAATGGTGTCGGAGCTTTCAACCTCAAGTGTAATGGTCTTTCCCGTGAGGGTTTTCACG 816 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 817 AAGATTTGCAT 827 >seq25263 Length=4349 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| || | | |||| ||| | || || ||||| ||||| ||||||| Sbjct 599 TTCCACCCCTTAATCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 658 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || | ||| |||| || || || || || ||||| || || | ||||| || | | Sbjct 659 CCAGAGTGCGTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCCGGAG 718 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||| || ||||||| |||||| | || | || | |||| Sbjct 719 GTATACCCTCCTTATCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAA 778 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| ||||||||||| || ||||| ||||| ||||| Sbjct 779 CCTCAAGTGTAATGGTCTTTCCCGTGAGGGTTTTCACGAAGATTTGCAT 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324210257496000