Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq24040 100 3e-16 seq105781 91.5 2e-13 seq89506 91.5 2e-13 seq69626 91.5 2e-13 seq32325 91.5 2e-13 >seq24040 Length=12015 Score = 100 bits (110), Expect = 3e-16 Identities = 234/348 (67%), Gaps = 4/348 (1%) Strand=Plus/Plus Query 18683 CAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAA 18742 |||| || || |||||||||||||| ||||| | || ||| ||||| |||||| Sbjct 4015 CAACCCTCTTCTCAAAGAAATTAGTCTTTCCTTGCAAACTAATAAGCTCCATCTAATCAA 4074 Query 18743 ATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTA 18802 | || |||| ||| ||| | ||| | || || | || ||| ||||| | | Sbjct 4075 ACGGGTTTTGCGCATCATACAATTTCCCATAGCCCAAAGCCGATGATAGCCTATCAACCA 4134 Query 18803 CAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACA-GGTAGT 18861 |||||| |||||| | |||||| ||||| ||||||||| | || ||| |||| Sbjct 4135 CAAATTCAATATACTTACTCATCAAATCACCATTCATTCCCA-CAACGGCACACGGTAAA 4193 Query 18862 GCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTA 18921 ||||| | |||||| ||| || | ||||| | ||||||||| | |||||| Sbjct 4194 GCATCACATATAAATTCCCATTCAATCTCAACTGCATAAGATATAATATCTCTAACTCTC 4253 Query 18922 TCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAG 18980 |||| | | || | ||| || ||| | | |||||| ||||||||||| || | Sbjct 4254 TCTTTACTCAGCTTGTTAT-TTAGCAATTTGTAGAGCAAACAAGCAAAATCACAGTGCAA 4312 Query 18981 TCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 || || |||| ||||| ||||| || || || | |||||||| Sbjct 4313 GCCTTCATCTCGGGAGATCAACTCATTTGAGAAGGTGAGTCCAGGCAT 4360 >seq105781 Length=11737 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/336 (67%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 18683 CAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAA 18742 |||| || || |||||||||||||| ||||| | || ||| ||||| |||||| Sbjct 9125 CAACCCTCTTCTCAAAGAAATTAGTCTTTCCTTGCAAACTAATAAGCTCCATCTAATCAA 9184 Query 18743 ATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTA 18802 | || |||| ||| ||| | ||| | || || | || ||| ||||| | | Sbjct 9185 ACGGGTTTTGCGCATCATACAATTTCCCATAGCCCAAAGCCGATGATAGCCTATCAACCA 9244 Query 18803 CAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACA-GGTAGT 18861 |||||| |||||| | |||||| ||||| ||||||||| | || ||| |||| Sbjct 9245 CAAATTCAATATACTTACTCATCAAATCACCATTCATTCCCA-CAACGGCACACGGTAAA 9303 Query 18862 GCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTA 18921 ||||| | |||||| ||| || | ||||| | ||||||||| | |||||| Sbjct 9304 GCATCACATATAAATTCCCATTCAATCTCAACTGCATAAGATATAATATCTCTAACTCTC 9363 Query 18922 TCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAG 18980 |||| | | || | ||| || ||| | | |||||| ||||||||||| || | Sbjct 9364 TCTTTACTCAGCTTGTTAT-TTAGCAATTTGTAGAGCAAACAAGCAAAATCACAGTGCAA 9422 Query 18981 TCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || || |||| ||||| ||||| || || || Sbjct 9423 GCCTTCATCTCGGGAAATCAACTCATTCGAGAAAGT 9458 >seq89506 Length=9827 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/336 (67%), Gaps = 4/336 (1%) Strand=Plus/Minus Query 18683 CAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAA 18742 |||| || || |||||||||||||| ||||| | || ||| ||||| |||||| Sbjct 2613 CAACCCTCTTCTCAAAGAAATTAGTCTTTCCTTGCAAACTAATAAGCTCCATCTAATCAA 2554 Query 18743 ATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTA 18802 | || |||| ||| ||| | ||| | || || | || ||| ||||| | | Sbjct 2553 ACGGGTTTTGCGCATCATACAATTTCCCATAGCCCAAAGCCGATGATAGCCTATCAACCA 2494 Query 18803 CAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACA-GGTAGT 18861 |||||| |||||| | |||||| ||||| ||||||||| | || ||| |||| Sbjct 2493 CAAATTCAATATACTTACTCATCAAATCACCATTCATTCCCA-CAACGGCACACGGTAAA 2435 Query 18862 GCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTA 18921 ||||| | |||||| ||| || | ||||| | ||||||||| | |||||| Sbjct 2434 GCATCACATATAAATTCCCATTCAATCTCAACTGCATAAGATATAATATCTCTAACTCTC 2375 Query 18922 TCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAG 18980 |||| | | || | ||| || ||| | | |||||| ||||||||||| || | Sbjct 2374 TCTTTACTCAGCTTGTTAT-TTAGCAATTTGTAGAGCAAACAAGCAAAATCACAGTGCAA 2316 Query 18981 TCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || || |||| ||||| ||||| || || || Sbjct 2315 GCCTTCATCTCGGGAAATCAACTCATTCGAGAAAGT 2280 >seq69626 Length=16037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/336 (67%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 18683 CAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAA 18742 |||| || || |||||||||||||| ||||| | || ||| ||||| |||||| Sbjct 13425 CAACCCTCTTCTCAAAGAAATTAGTCTTTCCTTGCAAACTAATAAGCTCCATCTAATCAA 13484 Query 18743 ATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTA 18802 | || |||| ||| ||| | ||| | || || | || ||| ||||| | | Sbjct 13485 ACGGGTTTTGCGCATCATACAATTTCCCATAGCCCAAAGCCGATGATAGCCTATCAACCA 13544 Query 18803 CAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACA-GGTAGT 18861 |||||| |||||| | |||||| ||||| ||||||||| | || ||| |||| Sbjct 13545 CAAATTCAATATACTTACTCATCAAATCACCATTCATTCCCA-CAACGGCACACGGTAAA 13603 Query 18862 GCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTA 18921 ||||| | |||||| ||| || | ||||| | ||||||||| | |||||| Sbjct 13604 GCATCACATATAAATTCCCATTCAATCTCAACTGCATAAGATATAATATCTCTAACTCTC 13663 Query 18922 TCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAG 18980 |||| | | || | ||| || ||| | | |||||| ||||||||||| || | Sbjct 13664 TCTTTACTCAGCTTGTTAT-TTAGCAATTTGTAGAGCAAACAAGCAAAATCACAGTGCAA 13722 Query 18981 TCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || || |||| ||||| ||||| || || || Sbjct 13723 GCCTTCATCTCGGGAAATCAACTCATTCGAGAAAGT 13758 >seq32325 Length=15193 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/336 (67%), Gaps = 4/336 (1%) Strand=Plus/Minus Query 18683 CAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAA 18742 |||| || || |||||||||||||| ||||| | || ||| ||||| |||||| Sbjct 4429 CAACCCTCTTCTCAAAGAAATTAGTCTTTCCTTGCAAACTAATAAGCTCCATCTAATCAA 4370 Query 18743 ATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTA 18802 | || |||| ||| ||| | ||| | || || | || ||| ||||| | | Sbjct 4369 ACGGGTTTTGCGCATCATACAATTTCCCATAGCCCAAAGCCGATGATAGCCTATCAACCA 4310 Query 18803 CAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACA-GGTAGT 18861 |||||| |||||| | |||||| ||||| ||||||||| | || ||| |||| Sbjct 4309 CAAATTCAATATACTTACTCATCAAATCACCATTCATTCCCA-CAACGGCACACGGTAAA 4251 Query 18862 GCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTA 18921 ||||| | |||||| ||| || | ||||| | ||||||||| | |||||| Sbjct 4250 GCATCACATATAAATTCCCATTCAATCTCAACTGCATAAGATATAATATCTCTAACTCTC 4191 Query 18922 TCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAG 18980 |||| | | || | ||| || ||| | | |||||| ||||||||||| || | Sbjct 4190 TCTTTACTCAGCTTGTTAT-TTAGCAATTTGTAGAGCAAACAAGCAAAATCACAGTGCAA 4132 Query 18981 TCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || || |||| ||||| ||||| || || || Sbjct 4131 GCCTTCATCTCGGGAAATCAACTCATTCGAGAAAGT 4096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561356979480000