Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq78223 131 1e-25 seq101539 111 1e-19 seq13002 111 1e-19 seq97783 109 4e-19 seq83573 109 4e-19 seq25263 109 4e-19 seq91609 107 1e-18 seq100029 84.2 2e-11 seq21431 84.2 2e-11 >seq78223 Length=3817 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || ||||| ||| || ||||| |||||||||| ||| |||| | || ||| Sbjct 2011 ACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCCAGAGTTCGGCCATCCTCC 2070 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTCCTTGTCGCT 48676 |||||||| |||||||| |||| | ||| |||||| |||||| | || ||||| || Sbjct 2071 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATC-CCTTCCTTATCTTG 2129 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||| ||| ||| | | | | || || ||| ||||||| || || || || Sbjct 2130 AATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCTT 2189 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| ||||| || || ||||||||||||||| Sbjct 2190 TCCAGTCAACGTCTTGACAAAAATCTGCATC 2220 >seq101539 Length=5526 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || ||||| ||| || ||||| |||||||||| ||| |||| | || ||| Sbjct 2008 ACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCCAGAGTTCGGCCATCCTCC 2067 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTCCTTGTCGCT 48676 ||||||||||| ||||| |||| | ||| |||||| |||||| | || ||||| || Sbjct 2068 AACTGCTTACCTGCAAAGATCAACCTCTGCTGATCCGGTGGGATC-CCTTCCTTATCTTG 2126 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||| ||| ||| | | | | || || ||| ||||||| || || || || Sbjct 2127 AATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTT 2186 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || | || || ||||| || ||||| Sbjct 2187 TCCAGTAAGGGTCTTGACAAAGATTTGCAT 2216 >seq13002 Length=8172 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || || ||||| ||| ||||| ||| || || || ||||| || | Sbjct 5184 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 5125 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| || || || ||||| ||||| || |||| || Sbjct 5124 AGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 5065 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | || |||| ||||||| Sbjct 5064 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCCACC 5005 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| || ||||| || ||||||| ||||| || || ||||||||| || Sbjct 5004 TCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCATCCTG 4954 >seq97783 Length=4057 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || ||||||||||| | || | ||| Sbjct 382 AGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGA 441 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| |||||||| || |||| ||| || |||| ||||| ||||| Sbjct 442 CCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCT 501 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || ||| ||||| | ||| Sbjct 502 TTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTA 561 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || ||||| || ||||| || |||||||| Sbjct 562 ATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCAT 599 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| || | |||| ||| || || ||| || || ||||| ||||| | Sbjct 144 GCCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGC 203 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGG 48657 ||| | || | || |||||||| || || ||||| ||||| | ||| || |||| ||| Sbjct 204 AAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGG 263 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 || | |||||||| || ||| || || ||| | | | | || || ||||| Sbjct 264 GATC-CCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCA 322 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || | || || || || ||||||||||| || |||||||||||||| Sbjct 323 CTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 371 >seq83573 Length=2953 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || ||||||||||| | || | ||| Sbjct 2572 AGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGA 2513 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| |||||||| || |||| ||| || |||| ||||| ||||| Sbjct 2512 CCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCT 2453 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || ||| ||||| | ||| Sbjct 2452 TTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTA 2393 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || ||||| || ||||| || |||||||| Sbjct 2392 ATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCAT 2355 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| || | |||| ||| || || ||| || || ||||| ||||| | Sbjct 2810 GCCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGC 2751 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGG 48657 ||| | || | || |||||||| || || ||||| ||||| | ||| || |||| ||| Sbjct 2750 AAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGG 2691 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 || | |||||||| || ||| || || ||| | | | | || || ||||| Sbjct 2690 GATC-CCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCA 2632 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || | || || || || ||||||||||| || |||||||||||||| Sbjct 2631 CTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 2583 >seq25263 Length=4349 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || ||||||||||| | || | ||| Sbjct 382 AGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGA 441 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| |||||||| || |||| ||| || |||| ||||| ||||| Sbjct 442 CCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCT 501 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || ||| ||||| | ||| Sbjct 502 TTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTA 561 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || ||||| || ||||| || |||||||| Sbjct 562 ATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCAT 599 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| || | |||| ||| || || ||| || || ||||| ||||| | Sbjct 144 GCCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGC 203 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGG 48657 ||| | || | || |||||||| || || ||||| ||||| | ||| || |||| ||| Sbjct 204 AAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGG 263 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 || | |||||||| || ||| || || ||| | | | | || || ||||| Sbjct 264 GATC-CCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCA 322 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || | || || || || ||||||||||| || |||||||||||||| Sbjct 323 CTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 371 >seq91609 Length=4479 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || || ||||| ||| ||||| ||| || || || ||||| || | Sbjct 243 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCA 184 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| || || || ||||| ||||| || |||| || Sbjct 183 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 124 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | |||||| Sbjct 123 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCACC 64 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||||||||| || | ||||||||||| |||||||| Sbjct 63 TCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCAT 17 >seq100029 Length=1069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 159 GCCTCCCCTGAGGCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 100 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| |||| || | ||||||||| || || |||| | ||| ||||||| ||| Sbjct 99 GAGAGTACGACCGTCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCCGGGGG 40 Query 48659 AACGCCCTCCTTGTCGCTAATCTT 48682 | ||||||||||| |||||| Sbjct 39 GATACCCTCCTTGTCTTGAATCTT 16 >seq21431 Length=3066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 159 GCCTCCCCTGAGGCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 100 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| |||| || | ||||||||| || || |||| | ||| ||||||| ||| Sbjct 99 GAGAGTACGACCGTCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCCGGGGG 40 Query 48659 AACGCCCTCCTTGTCGCTAATCTT 48682 | ||||||||||| |||||| Sbjct 39 GATACCCTCCTTGTCTTGAATCTT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380440833561000