Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq92424 104 3e-17 seq78138 104 3e-17 seq75469 104 3e-17 seq57524 104 3e-17 seq39191 104 3e-17 seq39177 104 3e-17 seq37473 104 3e-17 seq80961 100 3e-16 seq88716 93.3 5e-14 seq24040 93.3 5e-14 >seq92424 Length=24121 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 4575 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 4634 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 4635 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 4694 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 4695 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 4752 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 4753 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 4812 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 4813 CAGATATTCTTGA 4825 >seq78138 Length=23827 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 4575 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 4634 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 4635 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 4694 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 4695 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 4752 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 4753 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 4812 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 4813 CAGATATTCTTGA 4825 >seq75469 Length=16383 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 4575 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 4634 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 4635 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 4694 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 4695 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 4752 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 4753 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 4812 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 4813 CAGATATTCTTGA 4825 >seq57524 Length=30065 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 4575 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 4634 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 4635 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 4694 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 4695 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 4752 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 4753 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 4812 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 4813 CAGATATTCTTGA 4825 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 25491 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 25432 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 25431 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 25372 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 25371 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 25314 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 25313 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 25254 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 25253 CAGATATTCTTGA 25241 >seq39191 Length=17717 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 4575 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 4634 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 4635 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 4694 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 4695 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 4752 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 4753 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 4812 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 4813 CAGATATTCTTGA 4825 >seq39177 Length=33841 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 4575 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 4634 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 4635 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 4694 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 4695 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 4752 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 4753 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 4812 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 4813 CAGATATTCTTGA 4825 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 29267 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 29208 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 29207 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 29148 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 29147 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 29090 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 29089 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 29030 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 29029 CAGATATTCTTGA 29017 >seq37473 Length=54660 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| ||||||| || || || | | || Sbjct 40526 TTTGTTGAGATGTTTGTTGGTGTCGGTGCCTCTCGGGTTCGTGACCTTTTCAAGAAGGCA 40585 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || | ||||| || ||||| || || | |||| | Sbjct 40586 AAGGAGAATGCTCCGTGCATTGTATTTGTCGATGAAATCGATGCTGTTGGAAGGCAAAGA 40645 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || ||||| ||||| || |||| || || | | Sbjct 40646 GGAACTGGCATTGGAGG--AGGAAACGATGAGAGGGAACAGACCCTTAACCAGCTCTTAA 40703 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | ||||||||||| ||||| | ||||| ||| | || ||||| || ||||| || | Sbjct 40704 CTGAGATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCAGCTACTAACCGTG 40763 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 40764 CCGATATTCTTGA 40776 >seq80961 Length=12804 Score = 100 bits (110), Expect = 3e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 |||||||||||||| ||||| ||| ||||| | ||| | || | | || ||| Sbjct 8958 GAGATGTTTGTTGGCGTGGGGGCCTCGAGGGTGAGAGATTTGTTCAACAAGGCGAAGGAA 8899 Query 175462 AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCT 175521 ||| || ||| | || |||||||||||||||||||| ||||| | ||| | | || Sbjct 8898 AATGCGCCTTGTTTGGTTTTCATTGATGAGATTGATGCCGTGGGGAGGCAGAGAGGGACT 8839 Query 175522 GG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGA 175579 || | | | | || |||||| ||| |||| |||||| | ||||| ||| | || |||| Sbjct 8838 GGAATTGGAGG--AGGAAATGATGAGCGAGAGCAAACACTGAATCAGCTATTGACTGAGA 8781 Query 175580 TGGATGGCTTT 175590 ||||||| ||| Sbjct 8780 TGGATGGGTTT 8770 >seq88716 Length=16829 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 64956 ATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATG 65015 ||| || ||||| | |||||||| | ||| ||| | ||||| | || | ||||| Sbjct 15780 ATATATAAAGGACTCAGCTGAAAAGCATAGGTTGTTTCATGCCATTGAGACGATCCCATG 15721 Query 65016 TATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC-TCCTTCG 65074 | ||||||||||||| || ||||| ||| ||| | || | || | || || | Sbjct 15720 TGTTGAGAAGAAGGCTAAGTGGGCGTTGAGGTGGAT---CA-ATGGTGGGGAATCGTTTG 15665 Query 65075 CCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG 65134 | ||| | || ||||||||||||||||||| || || || ||||| ||| ||||| | Sbjct 15664 CTGAGAGGATTATTGCGTTTGCGTGTGTGGAAGGAATTTTTTTCTCTGGGAGCTTCTGTG 15605 Query 65135 CTATTTATTGGTTGAAGAAGCGGGGT 65160 |||| | ||| |||||||| | ||| Sbjct 15604 CTATCTTCTGGCTGAAGAAGAGAGGT 15579 >seq24040 Length=12015 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 64956 ATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATG 65015 ||| || ||||| | |||||||| | ||| ||| | ||||| | || | ||||| Sbjct 4892 ATATATAAAGGACTCAGCTGAAAAGCATAGGTTGTTTCATGCCATTGAGACGATCCCATG 4833 Query 65016 TATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC-TCCTTCG 65074 | ||||||||||||| || ||||| ||| ||| | || | || | || || | Sbjct 4832 TGTTGAGAAGAAGGCTAAGTGGGCGTTGAGGTGGAT---CA-ATGGTGGGGAATCGTTTG 4777 Query 65075 CCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG 65134 | ||| | || ||||||||||||||||||| || || || ||||| ||| ||||| | Sbjct 4776 CTGAGAGGATTATTGCGTTTGCGTGTGTGGAAGGAATTTTTTTCTCTGGGAGCTTCTGTG 4717 Query 65135 CTATTTATTGGTTGAAGAAGCGGGGT 65160 |||| | ||| |||||||| | ||| Sbjct 4716 CTATCTTCTGGCTGAAGAAGAGAGGT 4691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595771688160000