Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq25263 102 1e-16 seq78223 96.9 6e-15 seq101539 95.1 2e-14 seq91609 91.5 3e-13 seq97783 86.0 1e-11 seq83573 86.0 1e-11 >seq25263 Length=4349 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | |||||| |||| || | |||| ||| || || || Sbjct 820 ATTTGCATTCCACCTCTGAGTCGAAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTG 879 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | | ||| || | || ||||||||||| || | ||||| || Sbjct 880 TAGTCGGCAAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGG 939 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| || || ||||| | || | ||| || || || ||| Sbjct 940 TCCGGTGGGATACCTTCTTTGTCCTGGATTTTAGCCTTGACATTGTCGATCGTGTCAGAA 999 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || |||||||| ||||| || ||||| Sbjct 1000 CTTTCCACCTCAAGGGTGATGGTCTTACCGGTAAGCGTTTTCACAAAAATCTGCAT 1055 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||||||||| | |||||| || || || || || || ||||| || || || Sbjct 454 TGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGGATC 513 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| ||||||||||| |||||| || || || || ||||| || Sbjct 514 TTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTTGCCA 573 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | || ||||| ||||| |||||| Sbjct 574 GTCAAGGTCTTTACGAATATCTGCATT 600 >seq78223 Length=3817 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 2064 ATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTT 2123 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || | ||| | ||| ||| || ||||| |||||| || || || || Sbjct 2124 ATCTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGAT 2183 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | ||| || ||||| || ||||| Sbjct 2184 GGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 >seq101539 Length=5526 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| |||||||| || |||| || | |||| ||| || || || |||||| Sbjct 2403 ATCCCACCCCTCAATCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 2462 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | || ||||||||||| || | ||||| || || || Sbjct 2463 GCAAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGG 2522 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || || | || | || ||| || || || |||| Sbjct 2523 GGGATGCCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCA 2582 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || ||||| ||||| || || || || ||||| Sbjct 2583 ACCTCTAGGGTTATGGTCTTTCCTGTGAGCGTCTTGACGAAGATCTGCAT 2632 >seq91609 Length=4479 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| ||||| | || |||||||||| || | ||| || || || ||||||| Sbjct 243 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCA 184 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | || || | || ||||| || ||||| | | ||| || || || || Sbjct 183 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 124 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || || || || |||| || | ||| || || || ||||| || || Sbjct 123 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCACC 64 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||| |||||||| ||||||||||| || |||||| Sbjct 63 TCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCATT 16 >seq97783 Length=4057 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||||||||| | |||||| || || || || || || ||||| || || || Sbjct 454 TGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGGATC 513 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| ||||||||||| |||||| || || || || ||||| || Sbjct 514 TTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTTGCCA 573 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | || ||||| ||||| |||||| Sbjct 574 GTCAAGGTCTTTACGAATATCTGCATT 600 >seq83573 Length=2953 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||||||||| | |||||| || || || || || || ||||| || || || Sbjct 2500 TGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGGATC 2441 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| ||||||||||| |||||| || || || || ||||| || Sbjct 2440 TTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTTGCCA 2381 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | || ||||| ||||| |||||| Sbjct 2380 GTCAAGGTCTTTACGAATATCTGCATT 2354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898451112240000