Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq21431 102 1e-16 seq97783 95.1 2e-14 seq83573 95.1 2e-14 seq78223 95.1 2e-14 seq25263 95.1 2e-14 >seq21431 Length=3066 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| |||||||| ||||| ||||| | || || || ||| Sbjct 388 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 447 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| |||||||| ||||| || || || || || || || Sbjct 448 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATCAG 507 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||| | || ||| |||| | ||||||||||| Sbjct 508 CAGAGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATAAT 567 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| || || Sbjct 568 ATTCAGAAGGAGTCTACTCTTCACTTGGT 596 >seq97783 Length=4057 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| || || ||||| || | ||||| || || Sbjct 372 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 313 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| ||||| || ||||| || || || || || || || Sbjct 312 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACCA 253 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||||| ||| || || ||| | |||||| | | ||| | |||||||||| Sbjct 252 GCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATAA 193 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 |||| || ||| |||| |||||| Sbjct 192 TATACAGAAGGAGTCGACCCTTCAT 168 >seq83573 Length=2953 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| || || ||||| || | ||||| || || Sbjct 2582 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 2641 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| ||||| || ||||| || || || || || || || Sbjct 2642 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACCA 2701 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||||| ||| || || ||| | |||||| | | ||| | |||||||||| Sbjct 2702 GCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATAA 2761 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 |||| || ||| |||| |||||| Sbjct 2762 TATACAGAAGGAGTCGACCCTTCAT 2786 >seq78223 Length=3817 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| || || || || | || |||||| || Sbjct 2447 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAAAGCTCA 2388 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || |||||||| |||||||| || ||||| || Sbjct 2387 GACACCATTGACAACGTTAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGACCAG 2328 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | |||||| ||||||||||| ||| | ||| | |||| ||||| Sbjct 2327 CAAAGACTTATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACTCTTGCAGACTATAAC 2268 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || || || ||| Sbjct 2267 ATTCAGAAAGAGTCTACTCTACACTTGGTG 2238 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| || || || | || || || || Sbjct 2219 ATGCAGATTTTTGTCAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCC 2160 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| || || |||||||| ||||| || || || || || Sbjct 2159 GACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCAG 2100 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| |||||| | || ||| | ||||| | | ||||| || Sbjct 2099 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAAC 2040 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| ||||||| || || || Sbjct 2039 ATTCAGAAGGAGTCGACGCTGCACTTGGT 2011 >seq25263 Length=4349 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| || || ||||| || | ||||| || || Sbjct 372 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 313 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| ||||| || ||||| || || || || || || || Sbjct 312 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACCA 253 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||||| ||| || || ||| | |||||| | | ||| | |||||||||| Sbjct 252 GCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATAA 193 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 |||| || ||| |||| |||||| Sbjct 192 TATACAGAAGGAGTCGACCCTTCAT 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730893121200000