Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq21431 145 1e-29 seq95352 127 4e-24 seq97783 87.8 4e-12 seq83573 87.8 4e-12 seq25263 87.8 4e-12 >seq21431 Length=3066 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || || || | ||||| ||| || ||||||||||| | Sbjct 615 ACCACCACGAAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTATAATCTGC 556 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||||| ||||||||||||| || || |||||||| || ||||| ||||| ||||| Sbjct 555 AAGGGTTCGACCATCATCCAATTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGTGG 496 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || ||||| |||||||| || ||||| || | ||| || || || Sbjct 495 GATCCCCTCCTTATCCTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCAC 436 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||||||| ||||| || ||||| | |||||||||||| Sbjct 435 CTCAAGAGTAATGGTTTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 388 >seq95352 Length=5640 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | ||| | ||| || ||| || ||||||| Sbjct 261 ACCACCACGGAGACGAAGGACAAGGTGCAGAGTCGACTCCTTTTGGATGTTGTAATCAGC 202 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | |||| |||||||| || || |||||||| || ||||| ||||| ||||| Sbjct 201 CAAAGTCCTCCCATCCTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGG 142 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || ||||| |||||||| || ||||| || | ||| || || || Sbjct 141 GATCCCCTCCTTATCCTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCAC 82 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||||||| ||||| || ||||| | |||||||||||| Sbjct 81 CTCAAGAGTAATGGTTTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 34 >seq97783 Length=4057 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| | | || || |||| ||||| ||||| || ||||| || | ||| Sbjct 190 ATATTATAATCTGCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTC 249 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || || || ||||| || ||||| || |||||| || | | Sbjct 250 TGCTGGTCCGGTGGGATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTA 309 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || ||||| || || || || || || || || || || | ||| |||||| Sbjct 310 TCCGAGCTCTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGC 369 Query 192535 ATT 192537 ||| Sbjct 370 ATT 372 >seq83573 Length=2953 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| | | || || |||| ||||| ||||| || ||||| || | ||| Sbjct 2764 ATATTATAATCTGCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTC 2705 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || || || ||||| || ||||| || |||||| || | | Sbjct 2704 TGCTGGTCCGGTGGGATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTA 2645 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || ||||| || || || || || || || || || || | ||| |||||| Sbjct 2644 TCCGAGCTCTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGC 2585 Query 192535 ATT 192537 ||| Sbjct 2584 ATT 2582 >seq25263 Length=4349 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| | | || || |||| ||||| ||||| || ||||| || | ||| Sbjct 190 ATATTATAATCTGCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTC 249 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || || || ||||| || ||||| || |||||| || | | Sbjct 250 TGCTGGTCCGGTGGGATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTA 309 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || ||||| || || || || || || || || || || | ||| |||||| Sbjct 310 TCCGAGCTCTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGC 369 Query 192535 ATT 192537 ||| Sbjct 370 ATT 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983130339450000