Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq21431 136 7e-27 seq95352 104 4e-17 seq97783 96.9 6e-15 seq83573 96.9 6e-15 seq25263 96.9 6e-15 >seq21431 Length=3066 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || || || | ||||| ||| || |||||||||||||| Sbjct 615 ACCACCACGAAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTATAATCTGC 556 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | ||| | ||||||||||| || || ||||| || || ||||| || || ||||| Sbjct 555 AAGGGTTCGACCATCATCCAATTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGTGG 496 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || ||||| |||||||| || ||||| || ||||| || || || Sbjct 495 GATCCCCTCCTTATCCTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCAC 436 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||||||||| ||||| || ||||| | ||||||||||| Sbjct 435 CTCAAGAGTAATGGTTTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 388 >seq95352 Length=5640 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || || ||||| || || ||||| || || ||||| || || || ||| Sbjct 188 TCCTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTTA 129 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || |||||||| || ||||| || ||||| || || || || ||||||||| Sbjct 128 TCCTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCACCTCAAGAGTAATG 69 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || ||||| | ||||||||||| Sbjct 68 GTTTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 34 >seq97783 Length=4057 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||||| | || || | || ||||| ||||| || |||||||| | ||| Sbjct 190 ATATTATAATCTGCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTC 249 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || ||||| || ||||| || |||||| || ||| Sbjct 250 TGCTGGTCCGGTGGGATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTA 309 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || ||||| || || || || || || || || || || | || |||||| Sbjct 310 TCCGAGCTCTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGC 369 Query 172068 ATT 172070 ||| Sbjct 370 ATT 372 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||| | || || || | || | ||| || ||||| ||||| Sbjct 370 ATTCCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCC 429 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || || |||||||| | |||||| ||||| || Sbjct 430 GCAAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGG 489 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || || || ||||| |||||||| || || Sbjct 490 GGAATACCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCA 549 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| ||||| ||||| || || || | ||||||||||||| Sbjct 550 ACCTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCATT 600 >seq83573 Length=2953 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||||| | || || | || ||||| ||||| || |||||||| | ||| Sbjct 2764 ATATTATAATCTGCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTC 2705 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || ||||| || ||||| || |||||| || ||| Sbjct 2704 TGCTGGTCCGGTGGGATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTA 2645 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || ||||| || || || || || || || || || || | || |||||| Sbjct 2644 TCCGAGCTCTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGC 2585 Query 172068 ATT 172070 ||| Sbjct 2584 ATT 2582 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||| | || || || | || | ||| || ||||| ||||| Sbjct 2584 ATTCCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCC 2525 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || || |||||||| | |||||| ||||| || Sbjct 2524 GCAAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGG 2465 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || || || ||||| |||||||| || || Sbjct 2464 GGAATACCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCA 2405 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| ||||| ||||| || || || | ||||||||||||| Sbjct 2404 ACCTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCATT 2354 >seq25263 Length=4349 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||||| | || || | || ||||| ||||| || |||||||| | ||| Sbjct 190 ATATTATAATCTGCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTC 249 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || ||||| || ||||| || |||||| || ||| Sbjct 250 TGCTGGTCCGGTGGGATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTA 309 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || ||||| || || || || || || || || || || | || |||||| Sbjct 310 TCCGAGCTCTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGC 369 Query 172068 ATT 172070 ||| Sbjct 370 ATT 372 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||| | || || || | || | ||| || ||||| ||||| Sbjct 370 ATTCCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCC 429 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || || |||||||| | |||||| ||||| || Sbjct 430 GCAAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGG 489 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || || || ||||| |||||||| || || Sbjct 490 GGAATACCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCA 549 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| ||||| ||||| || || || | ||||||||||||| Sbjct 550 ACCTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCATT 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903925380600000