Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq78223 132 4e-26 seq101539 122 8e-23 seq84028 109 5e-19 seq97783 107 2e-18 seq83573 107 2e-18 seq25263 107 2e-18 seq21431 107 2e-18 seq95352 98.7 9e-16 seq91609 98.7 9e-16 seq42099 95.1 1e-14 seq100029 84.2 2e-11 >seq78223 Length=3817 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || ||| | || || || || || || || || || || | | Sbjct 2220 GATGCAGATTTTTGTCAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTC 2161 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| |||||| ||||| || ||||| || || || ||||| Sbjct 2160 CGACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCA 2101 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||| || ||| |||||||| ||| || | ||||| || Sbjct 2100 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAA 2041 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| ||||| || |||||||| | || |||| ||||| Sbjct 2040 CATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGG 1993 Score = 122 bits (134), Expect = 8e-23 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || || || || ||| | | Sbjct 2448 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAAAGCTC 2389 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| ||| | || ||||||||| || ||||| || || || || | Sbjct 2388 AGACACCATTGACAACGTTAAGGCCAA-GATCCAAGATAAGGAAGGCATCCCCCCAGACC 2330 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTA 24879 | ||| | | ||||||||||| || ||||| |||||| ||| | | || |||| || Sbjct 2329 AGCAAAGACTTATCTTTGCCGGCAAGCAGCTCGAGGATGGTCG-CACTCTTG-CAGACTA 2272 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||||||| || || || || |||||||||||| Sbjct 2271 TAACATTCAGAAAGAGTCTACTCTACACTTGGTG 2238 >seq101539 Length=5526 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || | || || || | || Sbjct 2216 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTCC 2157 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||| ||||| || ||||| || || || ||||| Sbjct 2156 GACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCAG 2097 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||| |||||||| ||| || | ||||| ||| Sbjct 2096 CAGAGGTTGATCTTTGCAGGTAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAAC 2037 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || |||||||| | || |||| ||||| Sbjct 2036 ATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGG 1990 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || || || || || | | Sbjct 3319 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTC 3260 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| |||||||| || || || || Sbjct 3259 CGACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 3200 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | |||||||| || |||||||| |||||| | | | | | || || || Sbjct 3199 GCAAAGGCTCATCTTTGCTGGAAAACAGCTCGAGGATGGCCGTACCCTTGCCGACTACAA 3140 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| ||||| | || | | |||||| Sbjct 3139 CATCCAGAAGGAGTCTACCCTTCACCTGGTGCTTCGCCTTAGGGGAGGC 3091 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || || || || | | Sbjct 2632 ATGCAGATCTTCGTCAAGACGCTCACAGGAAAGACCATAACCCTAGAGGTTGAGAGCTCT 2573 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | || |||||| || || || || || || || || || Sbjct 2572 GACACCATTGACAACGTTAAGGCTAA-GATCCAGGATAAGGAGGGCATCCCCCCAGACCA 2514 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||||||||| || ||||| |||||| | | | | | || || || Sbjct 2513 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTGCCGACTACAA 2454 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||||||||| | |||||| | || || Sbjct 2453 CATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGATTGAGGGGTGG 2406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | | Sbjct 2860 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCA 2801 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || || || Sbjct 2800 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 2741 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | |||||||| || || ||||| |||||| ||| | | || |||| || | Sbjct 2740 CAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCG-TACTCTTG-CAGACTACA 2683 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || ||||| || || || || |||||| | || ||| | || || Sbjct 2682 ACATACAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTTGAGGGGTGG 2634 >seq84028 Length=6065 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || || || || ||| | | Sbjct 3177 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTGGAAAGCTC 3236 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | |||||| || |||||||||||||| || || ||||| || || Sbjct 3237 CGACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCA 3296 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | ||||| || ||||| || || || || | | | | | ||||| || Sbjct 3297 GCAAAGGCTCATCTTCGCGGGGAAGCAACTCGAAGACGGCCGCACCCTCGCTGATTACAA 3356 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| |||||||| ||||| || ||| Sbjct 3357 CATCCAAAAGGAGTCGACCCTTCAC 3381 >seq97783 Length=4057 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || || || || || | | Sbjct 1056 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTC 997 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| |||||||| || || || || Sbjct 996 CGACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 937 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||||||||| ||||| ||||| | | | | | || || || Sbjct 936 GCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 877 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||| || || || || || || ||||||||| | ||| Sbjct 876 CATCCAGAAAGAGTCTACCCTCCACTTGGTGCTTCGA 840 >seq83573 Length=2953 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || || || || ||| | | Sbjct 2126 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTC 2185 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | |||||| || |||||||||||||| || || ||||| || || Sbjct 2186 CGACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCA 2245 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | ||||| || || || || || || ||| | | | | | || || || Sbjct 2246 GCAAAGGCTCATCTTCGCAGGAAAGCAACTCGAAGATGGCCGCACCCTTGCCGACTACAA 2305 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 ||| || ||||| || || || ||| ||||| | ||||| Sbjct 2306 CATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGATT 2344 >seq25263 Length=4349 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||||||| |||||||| || || || || || || ||| | Sbjct 1056 GATGCAGATTTTTGTGAAAACGCTTACCGGTAAGACCATCACCCTTGAGGTGGAAAGTTC 997 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || ||||| ||||||||||| || || || || || Sbjct 996 TGACACGATCGACAATGTCAAGGCTAAAATCCAGGACAAAGAAGGTATCCCACCGGACCA 937 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||||||||| || ||||| |||||| | | | | | || || || Sbjct 936 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTGCCGACTACAA 877 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||| || ||||| || || || ||||||||| | ||| Sbjct 876 CATCCAGAAGGAGTCTACCCTCCACTTGGTGCTTCGA 840 >seq21431 Length=3066 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || ||||| ||||| || || || || | | Sbjct 388 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 447 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||| || || || || || || || || || ||||| Sbjct 448 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATCAG 507 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||||||| || |||| ||| ||| | | |||||||||| Sbjct 508 CAGAGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATAAT 567 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||| || || || |||||||| Sbjct 568 ATTCAGAAGGAGTCTACTCTTCACTTGGT 596 >seq95352 Length=5640 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || ||||| ||||| || || || || | | Sbjct 34 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 93 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||| || || || || || || || || || ||||| Sbjct 94 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCAGATCAG 153 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || |||||||| ||| | || | ||||| ||| Sbjct 154 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGGAGGACTTTGGCTGATTACAAC 213 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || |||||||| ||||| || ||| Sbjct 214 ATCCAAAAGGAGTCGACTCTGCAC 237 >seq91609 Length=4479 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||| || ||||| || || || || || ||| | | Sbjct 17 ATGCAGATCTTTGTAAAAACCCTAACAGGAAAAACGATCACCCTTGAGGTGGAATCTTCG 76 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 77 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 136 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| || || || || ||||||||||| | | | | | || || ||| Sbjct 137 CAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAAC 196 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || ||||| || | ||| | || || Sbjct 197 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGG 243 >seq42099 Length=15505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| |||||||| || || ||||| |||||||| ||| | | | Sbjct 15335 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATTACCCTCGAAGTCGAATCGAGC 15276 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || || || Sbjct 15275 GACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 15216 Query 24824 CAACGTT 24830 ||| ||| Sbjct 15215 CAAAGTT 15209 >seq100029 Length=1069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | | Sbjct 160 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCA 219 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || || || Sbjct 220 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 279 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | ||||| || || || ||||| |||||| ||| | | || |||| || | Sbjct 280 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCG-TACTCTTG-CAGACTACA 337 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || ||||| || || || || |||||| | || ||| | || || Sbjct 338 ACATACAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTTGAGGGGTGG 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449295861960000