Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06]
107,000 sequences; 660,509,584 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq78223 132 4e-26
seq101539 122 8e-23
seq84028 109 5e-19
seq97783 107 2e-18
seq83573 107 2e-18
seq25263 107 2e-18
seq21431 107 2e-18
seq95352 98.7 9e-16
seq91609 98.7 9e-16
seq42099 95.1 1e-14
seq100029 84.2 2e-11
>seq78223
Length=3817
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || ||| | || || || || || || || || || || | |
Sbjct 2220 GATGCAGATTTTTGTCAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTC 2161
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || ||| |||||| ||||| || ||||| || || || |||||
Sbjct 2160 CGACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCA 2101
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||||||||||| || ||| |||||||| ||| || | ||||| ||
Sbjct 2100 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAA 2041
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||| ||||| ||||| || |||||||| | || |||| |||||
Sbjct 2040 CATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGG 1993
Score = 122 bits (134), Expect = 8e-23
Identities = 159/214 (74%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | ||||| || || || || || || || || || || ||| | |
Sbjct 2448 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAAAGCTC 2389
Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
||||| | || |||| ||| | || ||||||||| || ||||| || || || || |
Sbjct 2388 AGACACCATTGACAACGTTAAGGCCAA-GATCCAAGATAAGGAAGGCATCCCCCCAGACC 2330
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTA 24879
| ||| | | ||||||||||| || ||||| |||||| ||| | | || |||| ||
Sbjct 2329 AGCAAAGACTTATCTTTGCCGGCAAGCAGCTCGAGGATGGTCG-CACTCTTG-CAGACTA 2272
Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTG 24913
||||||||| || || || || ||||||||||||
Sbjct 2271 TAACATTCAGAAAGAGTCTACTCTACACTTGGTG 2238
>seq101539
Length=5526
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || || || || || || || || | || || || | ||
Sbjct 2216 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTCC 2157
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| |||||| ||||| || ||||| || || || |||||
Sbjct 2156 GACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCAG 2097
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||| || || ||| |||||||| ||| || | ||||| |||
Sbjct 2096 CAGAGGTTGATCTTTGCAGGTAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAAC 2037
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| ||||| || |||||||| | || |||| |||||
Sbjct 2036 ATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGG 1990
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | ||||| || || || || || || || || || || || | |
Sbjct 3319 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTC 3260
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||||||||||||| |||||||| || || || ||
Sbjct 3259 CGACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 3200
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | | |||||||| || |||||||| |||||| | | | | | || || ||
Sbjct 3199 GCAAAGGCTCATCTTTGCTGGAAAACAGCTCGAGGATGGCCGTACCCTTGCCGACTACAA 3140
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||| || ||||| || || || ||| ||||| | || | | ||||||
Sbjct 3139 CATCCAGAAGGAGTCTACCCTTCACCTGGTGCTTCGCCTTAGGGGAGGC 3091
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||||| || || || || || || || || || || | |
Sbjct 2632 ATGCAGATCTTCGTCAAGACGCTCACAGGAAAGACCATAACCCTAGAGGTTGAGAGCTCT 2573
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | || |||||| || || || || || || || || ||
Sbjct 2572 GACACCATTGACAACGTTAAGGCTAA-GATCCAGGATAAGGAGGGCATCCCCCCAGACCA 2514
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | | ||||||||||| || ||||| |||||| | | | | | || || ||
Sbjct 2513 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTGCCGACTACAA 2454
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || ||||| || || || ||||||||| | |||||| | || ||
Sbjct 2453 CATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGATTGAGGGGTGG 2406
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || || || || ||||| || || | |
Sbjct 2860 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCA 2801
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| ||||| || || || || ||
Sbjct 2800 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 2741
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881
|| | | |||||||| || || ||||| |||||| ||| | | || |||| || |
Sbjct 2740 CAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCG-TACTCTTG-CAGACTACA 2683
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||| || ||||| || || || || |||||| | || ||| | || ||
Sbjct 2682 ACATACAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTTGAGGGGTGG 2634
>seq84028
Length=6065
Score = 109 bits (120), Expect = 5e-19
Identities = 147/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | ||||| || || || || || || || || || || ||| | |
Sbjct 3177 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTGGAAAGCTC 3236
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | |||||| || |||||||||||||| || || ||||| || ||
Sbjct 3237 CGACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCA 3296
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | | ||||| || ||||| || || || || | | | | | ||||| ||
Sbjct 3297 GCAAAGGCTCATCTTCGCGGGGAAGCAACTCGAAGACGGCCGCACCCTCGCTGATTACAA 3356
Query 24883 CATTCAAAAGGAATCGACACTACAC 24907
||| |||||||| ||||| || |||
Sbjct 3357 CATCCAAAAGGAGTCGACCCTTCAC 3381
>seq97783
Length=4057
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | ||||| || || || || || || || || || || || | |
Sbjct 1056 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTC 997
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||||||||||||| |||||||| || || || ||
Sbjct 996 CGACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 937
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | | |||||||||||||| ||||| ||||| | | | | | || || ||
Sbjct 936 GCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 877
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
||| || || || || || || ||||||||| | |||
Sbjct 876 CATCCAGAAAGAGTCTACCCTCCACTTGGTGCTTCGA 840
>seq83573
Length=2953
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | ||||| || || || || || || || || || || ||| | |
Sbjct 2126 GATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTC 2185
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | |||||| || |||||||||||||| || || ||||| || ||
Sbjct 2186 CGACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCA 2245
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | | ||||| || || || || || || ||| | | | | | || || ||
Sbjct 2246 GCAAAGGCTCATCTTCGCAGGAAAGCAACTCGAAGATGGCCGCACCCTTGCCGACTACAA 2305
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921
||| || ||||| || || || ||| ||||| | |||||
Sbjct 2306 CATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGATT 2344
>seq25263
Length=4349
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | |||||||| |||||||| || || || || || || ||| |
Sbjct 1056 GATGCAGATTTTTGTGAAAACGCTTACCGGTAAGACCATCACCCTTGAGGTGGAAAGTTC 997
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || || ||||| ||||||||||| || || || || ||
Sbjct 996 TGACACGATCGACAATGTCAAGGCTAAAATCCAGGACAAAGAAGGTATCCCACCGGACCA 937
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | | ||||||||||| || ||||| |||||| | | | | | || || ||
Sbjct 936 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTGCCGACTACAA 877
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
||| || ||||| || || || ||||||||| | |||
Sbjct 876 CATCCAGAAGGAGTCTACCCTCCACTTGGTGCTTCGA 840
>seq21431
Length=3066
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| | || || ||||| ||||| || || || || | |
Sbjct 388 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 447
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | || | || || ||| || || || || || || || || || |||||
Sbjct 448 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATCAG 507
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||||||||| || |||| ||| ||| | | ||||||||||
Sbjct 508 CAGAGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATAAT 567
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
||||| ||||| || || || ||||||||
Sbjct 568 ATTCAGAAGGAGTCTACTCTTCACTTGGT 596
>seq95352
Length=5640
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| | || || ||||| ||||| || || || || | |
Sbjct 34 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 93
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | || | || || ||| || || || || || || || || || |||||
Sbjct 94 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCAGATCAG 153
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||| || || || |||||||| ||| | || | ||||| |||
Sbjct 154 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGGAGGACTTTGGCTGATTACAAC 213
Query 24884 ATTCAAAAGGAATCGACACTACAC 24907
|| |||||||| ||||| || |||
Sbjct 214 ATCCAAAAGGAGTCGACTCTGCAC 237
>seq91609
Length=4479
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| ||||| || ||||| || || || || || ||| | |
Sbjct 17 ATGCAGATCTTTGTAAAAACCCTAACAGGAAAAACGATCACCCTTGAGGTGGAATCTTCG 76
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || || ||
Sbjct 77 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 136
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| || || || || ||||||||||| | | | | | || || |||
Sbjct 137 CAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAAC 196
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || || ||||| || | ||| | || ||
Sbjct 197 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGG 243
>seq42099
Length=15505
Score = 95.1 bits (104), Expect = 1e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| |||||||| || || ||||| |||||||| ||| | | |
Sbjct 15335 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATTACCCTCGAAGTCGAATCGAGC 15276
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| |||||||| || || || ||
Sbjct 15275 GACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 15216
Query 24824 CAACGTT 24830
||| |||
Sbjct 15215 CAAAGTT 15209
>seq100029
Length=1069
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || || || || ||||| || || | |
Sbjct 160 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCA 219
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| ||||| || || || || ||
Sbjct 220 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 279
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881
|| | | ||||| || || || ||||| |||||| ||| | | || |||| || |
Sbjct 280 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCG-TACTCTTG-CAGACTACA 337
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||| || ||||| || || || || |||||| | || ||| | || ||
Sbjct 338 ACATACAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTTGAGGGGTGG 386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449295861960000
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