Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq97783 100 2e-16 seq83573 100 2e-16 seq25263 100 2e-16 seq101539 93.3 3e-14 seq78223 87.8 1e-12 >seq97783 Length=4057 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| ||||| || || || || || |||||||| |||||| | || ||| Sbjct 600 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 541 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| ||| | | || || |||||| |||||||| || | ||| ||| || Sbjct 540 CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 481 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| |||| ||| || || ||||| ||||| | | || | ||||||||||| Sbjct 480 GCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAA 421 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || || || || | ||| ||||| | |||| || || |||| Sbjct 420 TATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACTTCGTGGTGGAA 371 >seq83573 Length=2953 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| ||||| || || || || || |||||||| |||||| | || ||| Sbjct 2354 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 2413 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| ||| | | || || |||||| |||||||| || | ||| ||| || Sbjct 2414 CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 2473 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| |||| ||| || || ||||| ||||| | | || | ||||||||||| Sbjct 2474 GCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAA 2533 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || || || || | ||| ||||| | |||| || || |||| Sbjct 2534 TATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACTTCGTGGTGGAA 2583 >seq25263 Length=4349 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| ||||| || || || || || |||||||| |||||| | || ||| Sbjct 600 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 541 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| ||| | | || || |||||| |||||||| || | ||| ||| || Sbjct 540 CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 481 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| |||| ||| || || ||||| ||||| | | || | ||||||||||| Sbjct 480 GCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAA 421 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || || || || | ||| ||||| | |||| || || |||| Sbjct 420 TATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACTTCGTGGTGGAA 371 >seq101539 Length=5526 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || | || || || ||||| ||| | || ||| Sbjct 2217 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTC 2158 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | || ||| |||||| || || ||||| | || |||||| Sbjct 2157 CGACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCA 2098 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||| ||||| ||| ||||||||| | |||| |||| |||||||| Sbjct 2097 GCAGAGGTTGATCTTTGCAGGTAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAA 2038 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 |||||| || || || ||| ||||| |||| | | ||||| || ||| Sbjct 2037 CATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGGA 1989 >seq78223 Length=3817 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || || || || ||||| ||| | || ||| | Sbjct 2219 ATGCAGATTTTTGTCAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCC 2160 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| |||||| || || ||||| | || |||||| Sbjct 2159 GACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCAG 2100 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || || ||| ||||||||| | |||| |||| ||||||||| Sbjct 2099 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAAC 2040 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||| || || || ||| ||||| |||| | | ||||| || ||| Sbjct 2039 ATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGGA 1992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412303228751000