Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq88716 127 3e-23 seq24040 127 3e-23 >seq88716 Length=16829 Score = 127 bits (140), Expect = 3e-23 Identities = 185/261 (71%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 || |||||||| ||||||| | || || ||||||||| ||||| || || |||| Sbjct 16450 ACCTGGACCTCGGTCATGAACCTTCCCGCGAGGTTCTCAAGGACGATCCCATCCGAGGCG 16509 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGA---GACC 796275 || ||||| || |||||||| |||||||| ||| || | | | || | | || Sbjct 16510 GCAAAAAATGCAAGGACGTGACAAATAAAGTGCTTCTCATCTTTGGTCAGGGCTTCGTCC 16569 Query 796276 CAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCC 796335 || ||| |||| | |||||| |||||||| || ||||| || |||||||||||| Sbjct 16570 CAATGGCGGATGTCAACAGAGAGGTCAACCTCCTCAGCAGTCCAGAACGAGGCCTCGGCC 16629 Query 796336 TTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGG 796395 || |||||||||||||| |||| |||| ||| ||||||| || | | ||| Sbjct 16630 TTCTTGTACATCTCCCAGATCCTAGGGTACTCGATCGGGAACATGCAGAACCTGTCCGGG 16689 Query 796396 TTCTCGCGTAGCAGCGGCTCG 796416 ||| | |||||||||||| Sbjct 16690 TTCGGGGCCAGCAGCGGCTCG 16710 Score = 95.1 bits (104), Expect = 2e-13 Identities = 183/268 (68%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 794397 CTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 |||||| ||||| ||||| |||||||| || || |||||||| || || || || || Sbjct 15585 CTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCACACACGC 15644 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | | | || ||| ||||| | ||| || | |||||||| ||| ||| Sbjct 15645 AAACGCAATAATCCTCTCAGCAAACGATTCCCCACCAT------TGATCCACCTCAACGC 15698 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||||| ||||| ||| || | || | ||| || ||||| |||| | | ||| Sbjct 15699 CCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAACAACCTATGCTT 15758 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGA-GCGAGTAGGTCTCTGAGTGGATGT 794635 || | | |||||| | || | || | || | || | || |||| ||||| |||| Sbjct 15759 TTCAGCTGAGTCCTTTATATATGACTCAAGCAGCAAGCTA-TACATCTCAGAGTGTATGT 15817 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAA 794663 | || ||||| |||||||||||||| || Sbjct 15818 TCTCAATGGCAATCTGGAAGCCATAGAA 15845 >seq24040 Length=12015 Score = 127 bits (140), Expect = 3e-23 Identities = 185/261 (71%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 || |||||||| ||||||| | || || ||||||||| ||||| || || |||| Sbjct 5562 ACCTGGACCTCGGTCATGAACCTTCCCGCGAGGTTCTCAAGGACGATCCCATCCGAGGCG 5621 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGA---GACC 796275 || ||||| || |||||||| |||||||| ||| || | | | || | | || Sbjct 5622 GCAAAAAATGCAAGGACGTGACAAATAAAGTGCTTCTCATCTTTGGTCAGGGCTTCGTCC 5681 Query 796276 CAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCC 796335 || ||| |||| | |||||| |||||||| || ||||| || |||||||||||| Sbjct 5682 CAATGGCGGATGTCAACAGAGAGGTCAACCTCCTCAGCAGTCCAGAACGAGGCCTCGGCC 5741 Query 796336 TTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGG 796395 || |||||||||||||| |||| |||| ||| ||||||| || | | ||| Sbjct 5742 TTCTTGTACATCTCCCAGATCCTAGGGTACTCGATCGGGAACATGCAGAACCTGTCCGGG 5801 Query 796396 TTCTCGCGTAGCAGCGGCTCG 796416 ||| | |||||||||||| Sbjct 5802 TTCGGGGCCAGCAGCGGCTCG 5822 Score = 95.1 bits (104), Expect = 2e-13 Identities = 183/268 (68%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 794397 CTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 |||||| ||||| ||||| |||||||| || || |||||||| || || || || || Sbjct 4697 CTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCACACACGC 4756 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | | | || ||| ||||| | ||| || | |||||||| ||| ||| Sbjct 4757 AAACGCAATAATCCTCTCAGCAAACGATTCCCCACCAT------TGATCCACCTCAACGC 4810 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||||| ||||| ||| || | || | ||| || ||||| |||| | | ||| Sbjct 4811 CCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAACAACCTATGCTT 4870 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGA-GCGAGTAGGTCTCTGAGTGGATGT 794635 || | | |||||| | || | || | || | || | || |||| ||||| |||| Sbjct 4871 TTCAGCTGAGTCCTTTATATATGACTCAAGCAGCAAGCTA-TACATCTCAGAGTGTATGT 4929 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAA 794663 | || ||||| |||||||||||||| || Sbjct 4930 TCTCAATGGCAATCTGGAAGCCATAGAA 4957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7904864321973000