Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq91609 111 1e-19 seq101539 107 2e-18 seq78223 105 5e-18 seq97783 98.7 8e-16 seq83573 98.7 8e-16 seq25263 98.7 8e-16 seq13002 84.2 2e-11 >seq91609 Length=4479 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| ||||| ||||||| ||||| || ||| | || ||| || Sbjct 14 AAAATGCAGATCTTTGTAAAAACCCTAACAGGAAAAACGATCACCCTTGAGGTGGAATCT 73 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || ||||| || || || ||| | || ||| Sbjct 74 TCGGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 133 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || |||| ||||| || ||||||||||||| | || | || |||||| Sbjct 134 CAGCAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTAC 193 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAA 107791 ||||| || |||||||| ||| |||| ||||| |||| ||| | || ||| ||| || Sbjct 194 AACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGGAGCTAAGAA 252 >seq101539 Length=5526 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| || | || || || ||||| ||| | || ||| ||| Sbjct 2217 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTC 2158 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | || ||| ||||||| ||||| ||||| | || ||||| Sbjct 2157 -CGACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATC 2099 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | ||| ||||| ||| ||||||| | | ||| |||| || |||| Sbjct 2098 AGCAGAGGTTGATCTTTGCAGGTAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACA 2039 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||| |||||||| ||| ||||| |||| Sbjct 2038 ACATTCAGAAGGAGTCGACGCTGCACTTGGT 2008 >seq78223 Length=3817 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || || || || || ||||| ||| | || ||| ||| Sbjct 2219 ATGCAGATTTTTGTCAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTC- 2161 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || ||| ||||||| ||||| ||||| | || |||||| Sbjct 2160 CGACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCA 2101 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||| ||||||| | | ||| |||| || ||||| Sbjct 2100 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAA 2041 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| ||| ||||| |||| Sbjct 2040 CATTCAGAAGGAGTCGACGCTGCACTTGGT 2011 >seq97783 Length=4057 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || || || || || || || |||||||| |||||| | || ||| ||| Sbjct 600 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 541 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||||| ||| | | || || ||||| || ||||| || | ||| ||| | Sbjct 540 -CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACC 482 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| |||| ||| || || ||||| ||||||| || | ||||| |||| Sbjct 481 AGCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACA 422 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 | || || |||||||| || | ||| ||||| | || | || || |||| Sbjct 421 ATATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACTTCGTGGTGGAA 371 >seq83573 Length=2953 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || || || || || || || |||||||| |||||| | || ||| ||| Sbjct 2354 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 2413 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||||| ||| | | || || ||||| || ||||| || | ||| ||| | Sbjct 2414 -CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACC 2472 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| |||| ||| || || ||||| ||||||| || | ||||| |||| Sbjct 2473 AGCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACA 2532 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 | || || |||||||| || | ||| ||||| | || | || || |||| Sbjct 2533 ATATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACTTCGTGGTGGAA 2583 >seq25263 Length=4349 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || || || || || || || |||||||| |||||| | || ||| ||| Sbjct 600 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 541 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||||| ||| | | || || ||||| || ||||| || | ||| ||| | Sbjct 540 -CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACC 482 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| |||| ||| || || ||||| ||||||| || | ||||| |||| Sbjct 481 AGCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACA 422 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 | || || |||||||| || | ||| ||||| | || | || || |||| Sbjct 421 ATATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACTTCGTGGTGGAA 371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || || ||||| | || || || |||||||| | || || ||| Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | | || || |||||| ||||| || || | || ||||| Sbjct 768 -CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATC 710 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | ||| || || || || ||||| | || |||||||||||| Sbjct 709 AGCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACA 650 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||| || ||||||||||| | ||| ||||| | |||| | || |||| Sbjct 649 ACATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGATTAAGGGGTGGAA 599 >seq13002 Length=8172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| | || || || || || ||| | || |||| | Sbjct 4958 ATGCAGATATTCGTGAAAACCCTGACGGGGAAGACGATCACCCTGGAGGTGGAGTCGTCG 5017 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | || ||| ||| Sbjct 5018 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5077 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||||| || ||||||||||||| || | || ||||||||| Sbjct 5078 CAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGACGGACGCTCGCCGACTACAAC 5137 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAA 107791 || || |||||||| ||| |||| ||||| |||| ||| | || ||| ||| || Sbjct 5138 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGGAGCTAAGAA 5193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398356639723000