Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06]
107,000 sequences; 660,509,584 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq84028 96.9 3e-15
seq83573 86.0 6e-12
>seq84028
Length=6065
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268
|||| || || || ||||| ||||||||||| | |||| ||||||||||||
Sbjct 3380 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGC 3321
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
|| || || |||| || | |||||| || ||||| ||||| |||||||| |||||
Sbjct 3320 TTCCCCGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTG 3261
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
||||| | || | ||||| | | ||| || |||| || | ||||||||| ||
Sbjct 3260 GCTTTTACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTG 3201
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
| ||||| || || || |||||
Sbjct 3200 AGGGTTTTCACAAAGATCTGCAT 3178
>seq83573
Length=2953
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
||||| || || || |||||||| ||| | |||| ||||||||||| || ||
Sbjct 2323 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCTTCGAGTTGCTTTCCT 2264
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
|| |||| || | |||||| || ||||| ||||| |||||||| ||||| ||||
Sbjct 2263 GCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTT 2204
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | || | ||||| | | ||| || |||| || | |||||||| || | |||
Sbjct 2203 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTT 2144
Query 137395 TTTACGAATATTTGCAT 137411
|| || || || |||||
Sbjct 2143 TTCACAAAGATCTGCAT 2127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 487890572400000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |