Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq91609 134 9e-27 seq25263 102 5e-17 seq97783 93.3 3e-14 seq78223 93.3 3e-14 seq84028 89.7 3e-13 seq95352 86.0 4e-12 seq101539 84.2 1e-11 seq83573 84.2 1e-11 >seq91609 Length=4479 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| | | ||||| ||| || || ||| || || |||||||| |||| Sbjct 243 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCA 184 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || ||||| || ||||||| |||||||| || |||| Sbjct 183 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 124 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| | ||||| |||||||| Sbjct 123 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTGTCGATCGTGTCCGAAGATTCCAC 65 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 64 CTCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCAT 17 >seq25263 Length=4349 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||||| || || || ||| || || |||||||| |||| Sbjct 829 CCACCTCTGAGTCGAAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 888 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || ||||||||||| || | | |||||| || | || Sbjct 889 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 948 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| ||||| | | |||| ||| | ||||| |||||| Sbjct 949 ATACCTTCTTTGTCCTGGATTTT-AGCCTTGACATTGTCGATCGTGTCAGAACTTTCCAC 1007 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| || | |||||| ||||| |||||||| Sbjct 1008 CTCAAGGGTGATGGTCTTACCGGTAAGCGTTTTCACAAAAATCTGCAT 1055 >seq97783 Length=4057 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||||| || || || |||||| || |||||||| |||| Sbjct 829 CCACCTCTGAGTCGAAGCACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCA 888 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || |||||||| || | | |||||| ||| | || Sbjct 889 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 948 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| ||| | ||||||| || || Sbjct 949 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGA-CATTGTCGATGGTGTCGGAGCTCTCGAC 1007 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 1008 CTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1055 >seq78223 Length=3817 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| || || || ||| || || ||||||||||| | Sbjct 1993 CCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCC 2052 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || ||||||||||| ||||| | ||||||||| | || Sbjct 2053 AGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGG 2112 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || || || |||| || | ||||||| || || Sbjct 2113 ATCCCTTCCTTATCTTGAATCTT-TGCTTTCACATTATCAATGGTGTCGGAGCTCTCAAC 2171 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || ||||| || ||||| |||||||| Sbjct 2172 CTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 >seq84028 Length=6065 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| ||||||||||| | ||| ||||| |||| || | ||| || || || || Sbjct 3369 CTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGCTTCCCCGCGAA 3310 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | | ||||| || | || | || |||||||| ||||| ||| | | | Sbjct 3309 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTTA-CGT 3251 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| |||||| |||| |||||||| || || || | ||||| | Sbjct 3250 TGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTCA 3191 Query 33737 CAAAGATCTGCAT 33749 ||||||||||||| Sbjct 3190 CAAAGATCTGCAT 3178 >seq95352 Length=5640 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| ||||| ||||||||||| | | || | | || |||||||| Sbjct 236 TGCAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTCCCATCCTCCAATTGC 177 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| ||||| ||||| | |||||||||| | || | || || || || ||||| Sbjct 176 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTTATCCTGTATTTT- 118 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 || | |||| ||| | || || ||| ||||| |||| || || ||||| || Sbjct 117 TGCCTTCACATTGTCAATTGTATCAGAGCT---CTCCACCTCAAGAGTAATGGTTTTCCC 61 Query 33723 TGTTAACGTTTTTACAAAGATCTGCATA 33750 || || ||||| ||||| ||||||||| Sbjct 60 AGTCAAGGTTTTCACAAATATCTGCATA 33 >seq101539 Length=5526 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||||||| | ||||||||| || || ||| || ||||||||||| || | Sbjct 2633 ACCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGC 2692 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || || ||||| || | | |||||| ||| | || Sbjct 2693 AAGAGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 2752 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||| ||||| ||| || | | || | ||| | |||||| ||| | Sbjct 2753 GATACCTTCCTTGTCCTGAATCTT-AGCCTTGACGTTGTCAATGGTGTCTGAGCT---CT 2808 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| || || || || | || || || ||||||||||| Sbjct 2809 CCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 2860 >seq83573 Length=2953 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || || || | ||||| || || || ||| || || |||||||| |||| Sbjct 2353 CCACCCCTTAATCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 2294 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||| ||||| || || || | | ||||| || | || Sbjct 2293 AGGGTGCGGCCATCTTCGAGTTGCTTTCCTGCGAAGATGAGCCTTTGCTGGTCCGGAGGA 2234 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||||| ||| | | | ||| | ||||||| |||||| Sbjct 2233 ATGCCCTCTTTGTCTTGGATTTTGGCTTTTA-CGTTGTCGATGGTGTCGGAGCTTTCCAC 2175 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 2174 CTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328275349440000