Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq84028 127 5e-24 seq25263 123 6e-23 seq95352 120 7e-22 seq78223 120 7e-22 seq97783 116 9e-21 seq91609 113 1e-19 seq101539 111 4e-19 seq21431 96.9 8e-15 seq100029 93.3 1e-13 >seq84028 Length=6065 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || |||||||| | || |||||||| || ||| Sbjct 3181 CAGATCTTTGTGAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTGGAAAGCTCCGAC 3240 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| ||||| || ||| || ||||| ||||| || ||| |||||| || Sbjct 3241 ACCATCGACAACGTAAAAGCCAAA-ATCCAAGACAAAGAGGGCATTCCTCCGGACCAGCA 3299 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| || |||||||| || ||||| | ||||| || | || | || ||||||||| | Sbjct 3300 AAGGCTCATCTTCGCGGGGAAGCAACTCGAAGACGGCCGCACCCTCGCTGATTACAACAT 3359 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| || ||||| || ||||||||||| Sbjct 3360 CCAAAAGGAGTCGACCCTTCACCTTGT 3386 >seq25263 Length=4349 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||| || || || || ||||| | || ||||||||||||||| Sbjct 1052 CAGATTTTTGTGAAAACGCTTACCGGTAAGACCATCACCCTTGAGGTGGAAAGTTCTGAC 993 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || || || || |||||||| || |||||| || Sbjct 992 ACGATCGACAATGTCAAGGCTAAAATCCAGGACAAAGAAGGTATCCCACCGGACCAGCAG 933 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| | || ||||| | || | ||||| |||||| || Sbjct 932 AGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTGCCGACTACAACATC 873 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| |||||||| || ||| Sbjct 872 CAGAAGGAGTCTACCCTCCAC 852 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||| || || || | || || ||||| || ||||| | || Sbjct 812 AAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTCCGACACCATTGACAAC 753 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || || ||||| || || |||||||| Sbjct 752 GTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCAGCAGAGGCTTATCTTT 693 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | || |||||| | ||| |||| || |||||| ||||||| |||||| Sbjct 692 GCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAACATCCAGAAGGAGTCT 633 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 632 ACCCTCCACCTGGT 619 >seq95352 Length=5640 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | || || ||||| || ||| | || ||||| || ||||| Sbjct 37 CAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCTGAT 96 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||| || || || || || || || || || || Sbjct 97 ACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCAGATCAGCAG 156 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || |||||||| ||||| ||||| ||||||||||| ||||||||| || Sbjct 157 AGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGGAGGACTTTGGCTGATTACAACATC 216 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| ||||| |||||||| Sbjct 217 CAAAAGGAGTCGACTCTGCACCTTGT 242 >seq78223 Length=3817 Score = 120 bits (132), Expect = 7e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||| | || ||||| || ||||| |||| || || || || ||| Sbjct 2216 CAGATTTTTGTCAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCCGAC 2157 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || |||||||| ||||||||| || ||||| || ||||| || Sbjct 2156 ACCATTGATAATGTGAAAGCAAA-GATTCAAGATAAGGAAGGGATCCCACCGGATCAGCA 2098 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| ||||||||||||||||| ||||| | ||| |||| ||||||||| | Sbjct 2097 GAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAACAT 2038 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || || ||| | ||| Sbjct 2037 TCAGAAGGAGTCGACGCTGCACTTGGTT 2010 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || ||||| | || || ||||| || ||| Sbjct 2444 CAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAAAGCTCAGAC 2385 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||| || || ||| ||| Sbjct 2384 ACCATTGACAACGTTAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGACCAGCAA 2325 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||| ||||| |||||| | || ||||| | ||| | || || || ||| | Sbjct 2324 AGACTTATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACTCTTGCAGACTATAACATT 2265 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||||||| ||| Sbjct 2264 CAGAAAGAGTCTACTCTACAC 2244 >seq97783 Length=4057 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||| || || || | || || ||||| || ||||| | || Sbjct 812 AAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTCCGACACCATTGACAAC 753 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || || ||||| || || |||||||| Sbjct 752 GTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCAGCAGAGGCTTATCTTT 693 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | || |||||| | ||| |||| || |||||| ||||||| |||||| Sbjct 692 GCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAACATCCAGAAGGAGTCT 633 Query 206365 ACTCTTCACCTTGT 206378 ||||| |||||||| Sbjct 632 ACTCTCCACCTTGT 619 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || ||||| | || || || || || ||| Sbjct 1052 CAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTCCGAC 993 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || |||||||| || ||| || Sbjct 992 ACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAG 933 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| ||||| |||||| | || || || | || | ||||| |||||| || Sbjct 932 AGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAACATC 873 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| || ||| Sbjct 872 CAGAAAGAGTCTACCCTCCAC 852 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||||||||| ||||||| || ||||| |||| ||| | |||||| || Sbjct 619 ACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGTCCATCCTCA 678 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| || || |||||||||| || ||| Sbjct 679 AGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGA 711 >seq91609 Length=4479 Score = 113 bits (124), Expect = 1e-19 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| || ||||||||||||||||| | || |||||| Sbjct 14 AAAATG---CAGATCTTTGTAAAAACCCTAACAGGAAAAACGATCACCCTTGAGGTGGAA 70 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| ||||| |||| || ||| ||||| || || || || || || |||| Sbjct 71 TCTTCGGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCG 130 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || || ||||| ||||||||| |||| || || | || | ||||| Sbjct 131 GACCAGCAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGCACCCTTGCCGAC 190 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAG 206384 |||||| ||||||| ||||| || || || || || |||| Sbjct 191 TACAACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAG 231 >seq101539 Length=5526 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || ||||| || ||||| ||||| || || || || ||| Sbjct 2213 CAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTCCGAC 2154 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || |||||||| ||||||||| || ||||| || ||||| || Sbjct 2153 ACCATTGATAATGTGAAAGCAAA-GATTCAAGATAAGGAAGGGATCCCACCGGATCAGCA 2095 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || || ||||||||||| ||||| | ||| |||| ||||||||| | Sbjct 2094 GAGGTTGATCTTTGCAGGTAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAACAT 2035 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || || ||| | ||| Sbjct 2034 TCAGAAGGAGTCGACGCTGCACTTGGTT 2007 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| |||||||||||||| || || || | || || || || |||||| Sbjct 2629 CAGATCTTCGTCAAGACGCTCACAGGAAAGACCATAACCCTAGAGGTTGAGAGCTCTGAC 2570 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 2569 ACCATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGCAG 2510 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| | || ||||| | || | ||||| |||||| || Sbjct 2509 AGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTGCCGACTACAACATC 2450 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| |||||||| || ||| Sbjct 2449 CAGAAGGAGTCTACCCTCCAC 2429 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || || || ||||| || || | |||||||| || ||| Sbjct 3004 AAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAGCAGAGGTTGATCTTCGCTGGTAAG 2945 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || || | ||| | ||||| |||||| ||||||| ||||||||||||||| Sbjct 2944 CAGCTTGAGGACGGTCGTACTCTCGCCGACTACAACATCCAGAAGGAGTCTACTCTTCAC 2885 Query 206374 CTTGT 206378 || || Sbjct 2884 CTGGT 2880 >seq21431 Length=3066 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | || || ||||| || ||| | || ||||| || ||||| Sbjct 391 CAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCTGAT 450 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||| || || || || || || || ||||| || Sbjct 451 ACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATCAGCAG 510 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| ||||| ||||| ||||| ||||| | || | || ||||| || | Sbjct 511 AGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATAATATT 570 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||||||| | ||| | | ||||| Sbjct 571 CAGAAGGAGTCTACTCTTCACTTGGTTCTCCGCCTTCG 608 >seq100029 Length=1069 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| |||||||||||||| || || || | || || || || |||||| Sbjct 391 CAGATCTTCGTCAAGACGCTCACAGGAAAGACCATAACCCTAGAGGTTGAGAGCTCTGAC 450 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 451 ACCATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGCAG 510 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || || || ||||||||| | || ||||| | || | ||||| |||||| || Sbjct 511 AGGCTCATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTACAACATC 570 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 571 CAGAAGGAGTCGACCCTCCACCTGGT 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180200597547000