Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq84028 87.8 2e-12 seq97783 82.4 7e-11 seq83573 82.4 7e-11 seq25263 82.4 7e-11 >seq84028 Length=6065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 3178 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTGGAAAGCTCC 3237 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | |||||| ||||| || |||||||| || || || || ||| Sbjct 3238 GACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCAG 3297 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||| | || || || ||||||||||| | | | || |||||||| Sbjct 3298 CAAAGGCTCATCTTCGCGGGGAAGCAACTCGAAGACGGCCGCACCCTCGCTGATTACAAC 3357 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || ||||| || || ||| |||| Sbjct 3358 ATCCAAAAGGAGTCGACCCTTCA 3380 >seq97783 Length=4057 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || || || || ||| |||| || | || || || | | Sbjct 599 ATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTCC 540 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || || || ||||||||||| || || || ||| Sbjct 539 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAG 480 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||||| | |||||| || || || || | | | | | ||||||||| Sbjct 479 CAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAAT 420 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || || || || ||| |||| || ||| Sbjct 419 ATCCAGAAGGAGTCAACCCTTCACTTGGTG 390 >seq83573 Length=2953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || || || || ||| |||| || | || || || | | Sbjct 2355 ATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTCC 2414 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || || || ||||||||||| || || || ||| Sbjct 2415 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAG 2474 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||||| | |||||| || || || || | | | | | ||||||||| Sbjct 2475 CAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAAT 2534 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || || || || ||| |||| || ||| Sbjct 2535 ATCCAGAAGGAGTCAACCCTTCACTTGGTG 2564 >seq25263 Length=4349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || || || || ||| |||| || | || || || | | Sbjct 599 ATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTCC 540 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || || || ||||||||||| || || || ||| Sbjct 539 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAG 480 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||||| | |||||| || || || || | | | | | ||||||||| Sbjct 479 CAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAAT 420 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || || || || ||| |||| || ||| Sbjct 419 ATCCAGAAGGAGTCAACCCTTCACTTGGTG 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444499086240000