Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq88716 113 6e-19 seq24040 113 6e-19 >seq88716 Length=16829 Score = 113 bits (124), Expect = 6e-19 Identities = 183/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||||| | |||||| || | || | ||||||| ||| |||| | Sbjct 16710 CGAGCCGCTGCTGGCCCCGAACCCGGACAGGTTCTGCATGTTCCCGATCGAGTACCCTAG 16651 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| || |||||||||||||| || ||||| || |||||||| |||| Sbjct 16650 GATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCGTTCTGGACTGCTGAGGAGGTTGACC 16592 Query 1455835 TCGGCGCCGACACGGTCCACTGG---GTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | |||| ||| ||| | | |||| | | || ||| || || || Sbjct 16591 TCTCTGTTGACATCCGCCATTGGGACGAAGCCCTGACCAAAGATGAGAAGCACTTTATTT 16532 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| || |||||| |||||| ||||| ||||| |||||||| || || Sbjct 16531 GTCACGTCCTTGCATTTTTT-GCCGCCTCGGATGGGATCGTCCTTGAGAACCTCGCGGGA 16473 Query 1455952 CGCTTTATGAAAGAGGTCCA 1455971 | || |||| |||||||| Sbjct 16472 AGGTTCATGACCGAGGTCCA 16453 >seq24040 Length=12015 Score = 113 bits (124), Expect = 6e-19 Identities = 183/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||||| | |||||| || | || | ||||||| ||| |||| | Sbjct 5822 CGAGCCGCTGCTGGCCCCGAACCCGGACAGGTTCTGCATGTTCCCGATCGAGTACCCTAG 5763 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| || |||||||||||||| || ||||| || |||||||| |||| Sbjct 5762 GATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCGTTCTGGACTGCTGAGGAGGTTGACC 5704 Query 1455835 TCGGCGCCGACACGGTCCACTGG---GTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | |||| ||| ||| | | |||| | | || ||| || || || Sbjct 5703 TCTCTGTTGACATCCGCCATTGGGACGAAGCCCTGACCAAAGATGAGAAGCACTTTATTT 5644 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| || |||||| |||||| ||||| ||||| |||||||| || || Sbjct 5643 GTCACGTCCTTGCATTTTTT-GCCGCCTCGGATGGGATCGTCCTTGAGAACCTCGCGGGA 5585 Query 1455952 CGCTTTATGAAAGAGGTCCA 1455971 | || |||| |||||||| Sbjct 5584 AGGTTCATGACCGAGGTCCA 5565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7167490853334000