Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12357 111 2e-19 seq10414 111 2e-19 >seq12357 Length=26847 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | |||||||| ||| | || | |||||| ||||| |||||| Sbjct 18130 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACCA 18071 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||| | |||||||||||| |||||| || || | || || ||||| ||| || Sbjct 18070 TTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGAG 18011 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || || || | ||||| ||||| || ||||| || Sbjct 18010 ACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGATT 17951 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || ||||| |||||| ||||| | ||||| ||||| Sbjct 17950 CCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 17910 >seq10414 Length=13365 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | |||||||| ||| | || | |||||| ||||| |||||| Sbjct 4648 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACCA 4589 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||| | |||||||||||| |||||| || || | || || ||||| ||| || Sbjct 4588 TTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGAG 4529 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || || || | ||||| ||||| || ||||| || Sbjct 4528 ACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGATT 4469 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || ||||| |||||| ||||| | ||||| ||||| Sbjct 4468 CCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 4428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685990059480000