Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq83573 95.1 1e-14 seq84028 89.7 4e-13 seq78223 89.7 4e-13 seq97783 84.2 2e-11 >seq83573 Length=2953 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | | |||| | |||||||| || || || Sbjct 2323 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCTTCGAGTTGCTTTCCT 2264 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | || || ||||| || | |||||||| || ||| ||| ||| Sbjct 2263 GCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTT 2204 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| || || || || || | ||||| || || ||| Sbjct 2203 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTT 2144 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 2143 TTCACAAAGATCTGCAT 2127 >seq84028 Length=6065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||| || | | |||| |||||||||| || || || Sbjct 3374 GTCGACTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGCTTCCCC 3315 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | || || ||||| || | |||||||| || ||| ||| ||| Sbjct 3314 GCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTT 3255 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| || || || || || | ||||| || || ||| Sbjct 3254 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTT 3195 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 3194 TTCACAAAGATCTGCAT 3178 >seq78223 Length=3817 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| |||| ||||| ||||| ||||| || ||||| | |||| | || ||| Sbjct 2239 ACCAAGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGCAAGAGTGCGACCATCCTCG 2298 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | || || | || || || || || | || || ||||| | Sbjct 2299 AGCTGCTTGCCGGCAAAGATAAGTCTTTGCTGGTCTGGGGGGATGCCTTCCTTATCTTGG 2358 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||||| | ||| || || || || || | ||| Sbjct 2359 ATCTTGGCCTTAACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTGATTGTCTTG 2418 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||||||||| ||||| Sbjct 2419 CCAGTGAGGGTTTTCACAAAGATCTGCAT 2447 >seq97783 Length=4057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| ||||| || || ||||||||| | | |||| |||| ||| Sbjct 847 ACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCG 906 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | ||||| | ||| || || || || | || || || || | Sbjct 907 AGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGG 966 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | || || || || || || | ||| Sbjct 967 ATCTTAGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTCTTG 1026 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||||||||| ||||| Sbjct 1027 CCAGTGAGGGTTTTCACAAAGATCTGCAT 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424380258984000