Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq92424 104 3e-17 seq78138 104 3e-17 seq75469 104 3e-17 seq57524 104 3e-17 seq39191 104 3e-17 seq39177 104 3e-17 seq37473 104 3e-17 seq80961 100 4e-16 seq88716 93.3 5e-14 seq24040 93.3 5e-14 >seq92424 Length=24121 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 4825 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 4766 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 4765 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 4708 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 4707 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 4648 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 4647 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 4588 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 4587 ACATCTCAACAAA 4575 >seq78138 Length=23827 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 4825 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 4766 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 4765 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 4708 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 4707 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 4648 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 4647 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 4588 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 4587 ACATCTCAACAAA 4575 >seq75469 Length=16383 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 4825 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 4766 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 4765 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 4708 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 4707 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 4648 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 4647 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 4588 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 4587 ACATCTCAACAAA 4575 >seq57524 Length=30065 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 4825 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 4766 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 4765 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 4708 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 4707 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 4648 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 4647 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 4588 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 4587 ACATCTCAACAAA 4575 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 25241 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 25300 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 25301 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 25358 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 25359 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 25418 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 25419 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 25478 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 25479 ACATCTCAACAAA 25491 >seq39191 Length=17717 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 4825 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 4766 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 4765 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 4708 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 4707 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 4648 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 4647 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 4588 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 4587 ACATCTCAACAAA 4575 >seq39177 Length=33841 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 4825 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 4766 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 4765 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 4708 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 4707 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 4648 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 4647 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 4588 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 4587 ACATCTCAACAAA 4575 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 29017 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 29076 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 29077 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 29134 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 29135 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 29194 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 29195 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 29254 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 29255 ACATCTCAACAAA 29267 >seq37473 Length=54660 Score = 104 bits (114), Expect = 3e-17 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | ||| ||||| | ||||| Sbjct 40776 TCAAGAATATCGGCACGGTTAGTAGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAA 40717 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | || |||| || ||||| |||||||| ||| || | | Sbjct 40716 CCATCCATCTCAGTTAAGAGCTGGTTAAGGGTCTGTTCCCTCTCATCGTTTCCT--CCTC 40659 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| | || || ||||| || ||||| | || ||||| || | Sbjct 40658 CAATGCCAGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCGACAAATACAATGCACG 40599 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || | | || || || ||||||| |||||| |||||||||| Sbjct 40598 GAGCATTCTCCTTTGCCTTCTTGAAAAGGTCACGAACCCGAGAGGCACCGACACCAACAA 40539 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 40538 ACATCTCAACAAA 40526 >seq80961 Length=12804 Score = 100 bits (110), Expect = 4e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| | |||||| |||| |||||||||| || Sbjct 8770 AAACCCATCCATCTCAGTCAATAGCTGATTCAGTGTTTGCTCTCGCTCATCATTTCCT-- 8827 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | |||| | | ||| | ||||| |||||||||||||||||||| || | | Sbjct 8828 CCTCCAATTCCAGTCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACCAAA 8887 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || |||||| || | | || | ||| | ||||| ||| ||||| ||| Sbjct 8888 CAAGGCGCATTTTCCTTCGCCTTGTTGAACAAATCTCTCACCCTCGAGGCCCCCACGCCA 8947 Query 11717 ACAAACATCTC 11727 ||||||||||| Sbjct 8948 ACAAACATCTC 8958 >seq88716 Length=16829 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| | |||||||| ||| | ||||| ||||| ||| ||||| || || || ||||| Sbjct 15579 ACCTCTCTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCAC 15638 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA-GCGAGACTTTGCATCAAACCATTTCA 122845 |||||||||||||| || | || || || || | || ||| | ||| ||| Sbjct 15639 ACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCAC----CATTGATCCACCTCA 15694 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 ||||| || ||||||||||||| |||||| | || | ||||| | ||| ||| | Sbjct 15695 ACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAACAACCTAT 15754 Query 122906 TCTTTTCAGATCCATCCTTAATGTAT 122931 |||||||| | ||||| || ||| Sbjct 15755 GCTTTTCAGCTGAGTCCTTTATATAT 15780 >seq24040 Length=12015 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| | |||||||| ||| | ||||| ||||| ||| ||||| || || || ||||| Sbjct 4691 ACCTCTCTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCAC 4750 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA-GCGAGACTTTGCATCAAACCATTTCA 122845 |||||||||||||| || | || || || || | || ||| | ||| ||| Sbjct 4751 ACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCAC----CATTGATCCACCTCA 4806 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 ||||| || ||||||||||||| |||||| | || | ||||| | ||| ||| | Sbjct 4807 ACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAACAACCTAT 4866 Query 122906 TCTTTTCAGATCCATCCTTAATGTAT 122931 |||||||| | ||||| || ||| Sbjct 4867 GCTTTTCAGCTGAGTCCTTTATATAT 4892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627192007200000