Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq88716 86.0 8e-12 seq24040 86.0 8e-12 seq80961 82.4 9e-11 >seq88716 Length=16829 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| | |||||||| |||||| || ||||| || |||||||| || || || ||||| Sbjct 15579 ACCTCTCTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCAC 15638 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCA 130202 |||||| ||||||| | | ||||||||| || | || || | |||| ||| Sbjct 15639 ACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCAC----CATTGATCCACCTCA 15694 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||||| ||||| ||||| | ||| |||| |||| || || | ||| Sbjct 15695 ACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAA 15746 >seq24040 Length=12015 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| | |||||||| |||||| || ||||| || |||||||| || || || ||||| Sbjct 4691 ACCTCTCTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCAC 4750 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCA 130202 |||||| ||||||| | | ||||||||| || | || || | |||| ||| Sbjct 4751 ACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCAC----CATTGATCCACCTCA 4806 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||||| ||||| ||||| | ||| |||| |||| || || | ||| Sbjct 4807 ACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAA 4858 >seq80961 Length=12804 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCA 14209 ||| ||||||||||||||||| || ||||| | ||||| || || |||||||| | | Sbjct 8770 AAACCCATCCATCTCAGTCAATAGCTGATTCAGTGTTTGCTCTCGCTCATCATTTCCTCC 8829 Query 14210 GGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | || ||| | | || ||| | || ||||| ||||| ||||| |||||||| | Sbjct 8830 TCCAATTCCAGTCCCTCT---CTGCCTCCCCACGGCATCAATCTCATCAATGAAAACCAA 8886 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 ||| || |||||| || | || | ||||| ||| ||| ||| || || || Sbjct 8887 ACAAGGCGCATTTTCCTTCGCCTTGTTGAACAAATCTCTCACCCTCGAGGCCCCCACGCC 8946 Query 14329 CACAAACATCTC 14340 ||||||||||| Sbjct 8947 AACAAACATCTC 8958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617608042920000