Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq21431 123 2e-23 seq78223 113 3e-20 seq97783 109 3e-19 seq83573 109 3e-19 seq25263 109 3e-19 seq84028 102 5e-17 seq101539 91.5 9e-14 seq13002 91.5 9e-14 seq95352 89.7 3e-13 seq6667 86.0 4e-12 seq64505 84.2 1e-11 >seq21431 Length=3066 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||||| || ||||| |||||| ||||| |||||||||| | Sbjct 614 CCACCACGAAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTATAATCTGCA 555 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || | ||| || |||||||| || || | ||| || ||||| || Sbjct 554 AGGGTTCGACCATCATCCAATTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGTGGG 495 Query 34600 ACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||||| || ||| || ||||| || || | |||||| || |||||||| Sbjct 494 ATCCCCTCCTTATCCTGT-AT-TTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCA 437 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || ||||| || || || ||||||||||| |||||||| Sbjct 436 CCTCAAGAGTAATGGTTTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 388 >seq78223 Length=3817 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| |||||||| ||||| | || ||||| Sbjct 2002 AGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCCAGAGTTCGG 2061 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || |||||||| || || | ||| || ||||| || | || ||| Sbjct 2062 CCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCC 2121 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||||| | ||| || || ||| ||||| |||||| || |||| ||| Sbjct 2122 TTATCTTGAATCTTT-GCTTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGGGT 2180 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || |||||||||||||| Sbjct 2181 GATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || ||||| ||| || ||||||||||| |||| ||| || || Sbjct 2230 AGGCGGAGCACCAAGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGCAAGAGTGCGA 2289 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | | || ||||| || || | || ||| Sbjct 2290 CCATCCTCGAGCTGCTTGCCGGCAAAGATAAGTCTTTGCTGGTCTGGGGGGATGCCTTCC 2349 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | |||||| | ||| |||||| ||| || || || | ||| Sbjct 2350 TTATCTTGGATC-TTGGCCTTAACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGT 2408 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||||||||||| |||||||| Sbjct 2409 GATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2447 >seq97783 Length=4057 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || || |||||| || || |||||||||| ||| || || Sbjct 154 AGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGG 213 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || | | ||| |||||||| || | |||||| Sbjct 214 CCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCC 273 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||| || || || ||| || || |||||||||||| | ||| Sbjct 274 TTATCC-TGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACTTCAAGGGT 332 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || ||||||||||||||||| Sbjct 333 GATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 371 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||||| ||||| || ||| || || ||||| || || | | Sbjct 829 CCACCTCTGAGTCGAAGCACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCA 888 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || |||||||| || | | ||| ||||| || || Sbjct 889 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 948 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||||| | || || | || ||||| |||||| || Sbjct 949 ATTCCTTCCTTGTCTTGGATCTTA-GCCTTGACATTGTCGATGGTGTCGGAGCTCTCGAC 1007 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | ||||||||||| |||||||| Sbjct 1008 CTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1055 >seq83573 Length=2953 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || || |||||| || || |||||||||| ||| || || Sbjct 2800 AGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGG 2741 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || | | ||| |||||||| || | |||||| Sbjct 2740 CCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCC 2681 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||| || || || ||| || || |||||||||||| | ||| Sbjct 2680 TTATCC-TGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACTTCAAGGGT 2622 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || ||||||||||||||||| Sbjct 2621 GATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 2583 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||||| || |||||| || ||||| || || | ||| || || | ||||| Sbjct 2336 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCTTC 2277 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||||| || || || || || | | || |||||||| || | ||||| |||||| Sbjct 2276 GAGTTGCTTTCCTGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTG 2217 Query 34617 GATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| ||| | ||| ||| | || ||||| ||| ||||| || | ||| || || | Sbjct 2216 GAT-TTTGGCTTTTACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCT 2158 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||||||||| |||||||| Sbjct 2157 TGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2127 >seq25263 Length=4349 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || || |||||| || || |||||||||| ||| || || Sbjct 154 AGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGG 213 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || | | ||| |||||||| || | |||||| Sbjct 214 CCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCC 273 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||| || || || ||| || || |||||||||||| | ||| Sbjct 274 TTATCC-TGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACTTCAAGGGT 332 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || ||||||||||||||||| Sbjct 333 GATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 371 Score = 107 bits (118), Expect = 1e-18 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||||| ||||| || |||||| || ||||| || || | | Sbjct 829 CCACCTCTGAGTCGAAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 888 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || |||||||| || | | ||| |||||||| || Sbjct 889 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 948 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||| | || || | || ||||| || ||||| Sbjct 949 ATACCTTCTTTGTCCTGGAT-TTTAGCCTTGACATTGTCGATCGTGTCAGAACTTTCCAC 1007 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA--TGTTGA 34711 || | ||| || || |||||||| | |||||||||||||||||||| |||||| Sbjct 1008 CTCAAGGGTGATGGTCTTACCGGTAAGCGTTTTCACAAAAATCTGCATCTGTTGA 1062 >seq84028 Length=6065 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| ||||| | || || || ||||||| ||||| || || || || Sbjct 3369 CTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGCTTCCCCGCGAA 3310 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | || |||||||| || | ||||| |||||| ||| ||| | ||| ||| Sbjct 3309 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGAT-TTTGGCTTTTACGT 3251 Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| ||| ||||| || | ||| ||||| || || || | ||||||| Sbjct 3250 TGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTCA 3191 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 3190 CAAAGATCTGCAT 3178 >seq101539 Length=5526 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || ||||| || | ||||| || || || |||||| || ||||| || || | Sbjct 3091 GCCTCCCCTAAGGCGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 3150 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || ||||| || ||||| || | | || ||||| || || Sbjct 3151 AAGGGTACGGCCATCCTCGAGCTGTTTTCCAGCAAAGATGAGCCTTTGCTGGTCTGGGGG 3210 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||||| |||||| | || || | || ||||| |||||| | Sbjct 3211 GATTCCTTCCTTGTCTTGGATCTTA-GCCTTGACATTGTCGATGGTGTCGGAGCTCTCGA 3269 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | ||||||||||| |||||||| Sbjct 3270 CCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 3318 >seq13002 Length=8172 Score = 91.5 bits (100), Expect = 9e-14 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 || ||||| ||| || || |||||| || ||||| || || | || || || |||| Sbjct 5170 CAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTCCGTCCGTC 5111 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || || || || || || || || | ||||| ||||||||||| | ||||||||||| Sbjct 5110 CTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 5051 Query 34614 TGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 |||| || | || ||| | || ||||| |||||| |||| ||| |||| Sbjct 5050 CTGGATC-TTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCCAGGGTGATCG 4992 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 | || || || | |||||||| || |||||||| ||| || Sbjct 4991 TCTTCCCCGTCAGGGTTTTCACGAATATCTGCATCCTGACTG 4950 >seq95352 Length=5640 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| ||||||||| ||||| ||||| | | || | | | || || | ||| Sbjct 236 TGCAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTCCCATCCTCCAATTGC 177 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC-TGTGATCTT 34622 || || ||||| || || | ||| || || || || | |||||||| || ||| || || Sbjct 176 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTTATCCTGT-AT-TT 119 Query 34623 TTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 ||| || || | |||||| || ||||||||| || | || || ||||| || | Sbjct 118 TTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCACCTCAAGAGTAATGGTTTTCCCAG 59 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||||||||| |||||||| Sbjct 58 TCAAGGTTTTCACAAATATCTGCAT 34 >seq6667 Length=12399 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||| || | |||||| ||||| || || |||||| |||| || | | Sbjct 10890 GCCACCTCAAAGGCGGAGCACCAAGTGGAGGGTTGATTCTTTTTGAGTGTTGTAGTGAGC 10949 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || | || || ||||| || || ||||| || | || || |||||||| || Sbjct 10950 AAGGACCCGATGATCCTCGAGTTGCTTTCCTGCAAAAATGAGCCGTTGCTGGTCCGGTGG 11009 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 || ||||||||||| ||| ||||| ||||||| | | |||| ||| || | Sbjct 11010 GACGCCCTCCTTGTCCCAGAT-TTTTGCTTTAACGTTGTCGACAGTGTTGGAGCTTTCGA 11068 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || | || || || | ||||||| ||| |||||||| Sbjct 11069 CCTCAAGGGTGATGGACTTGCCCGTGAGAGTTTTCATAAATATCTGCAT 11117 >seq64505 Length=10574 Score = 84.2 bits (92), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || || | ||| ||||| |||||| |||||||| || || | | Sbjct 3796 CCTCCTCTGAGCCTCAGAACAAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCCGCA 3855 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | |||||||||||||| || ||||| || || | |||||| || || || Sbjct 3856 AGGGTTCGGCCATCTTCAAGTTGTTTGCCCGCAAAAATCAACCTCTGTTGATCAGGTGGG 3915 Query 34600 ACTCCCTCCTT 34610 | ||||| ||| Sbjct 3916 A-TCCCTTCTT 3925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314319172931000