Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq95352 93.3 3e-14 seq25263 93.3 3e-14 seq84028 87.8 1e-12 seq83573 84.2 2e-11 seq21431 84.2 2e-11 >seq95352 Length=5640 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | ||||||||| ||||| |||| || || ||| | Sbjct 34 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 93 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||||||| || || || || | || || | Sbjct 94 GATACAATTGACAAT--GTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCAGATC 151 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| |||||||| || | | | ||| | ||||||| Sbjct 152 AGCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGGAGGACTTTGGCTGATTACA 211 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| |||| | || | ||| | ||||| || Sbjct 212 ACATCCAAAAGGAGTCGACTCTGCACCTTGTCCTTCGTCTCCGTGGTGG 260 >seq25263 Length=4349 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| ||||| || || || || |||| || ||||| | Sbjct 1055 ATGCAGATTTTTGTGAAAACGCTTACCGGTAAGACCATCACCCTTGAGGTGGAAAGTTCT 996 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| ||||| |||||||||||| | || ||| | Sbjct 995 GACACGATCGACAAT--GTCAAGGCTAAAATCCAGGACAAAGAAGGTATCCCACCGGACC 938 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || | || || | |||| | | |||| |||| Sbjct 937 AGCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTGCCGACTACA 878 Query 27968 ACATCCAAAAAGAG 27981 ||||||| || ||| Sbjct 877 ACATCCAGAAGGAG 864 >seq84028 Length=6065 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || ||||| || || || |||| || |||||| || Sbjct 3178 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTGGAAAGCTCC 3237 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| ||||| |||||||| || |||| ||| | Sbjct 3238 GACACCATCGACAAC--GTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACC 3295 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || || || || || ||| | || |||| |||| | | | ||||||| Sbjct 3296 AGCAAAGGCTCATCTTCGCGGGGAAGCAACTCGAAGACGGCCGCACCCTCGCTGATTACA 3355 Query 27968 ACATCCAAAAAGAG 27981 |||||||||| ||| Sbjct 3356 ACATCCAAAAGGAG 3369 >seq83573 Length=2953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || ||||| || || || |||| || |||||| || Sbjct 2127 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 2186 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| ||||| |||||||| || |||| ||| | Sbjct 2187 GACACCATCGACAAC--GTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACC 2244 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || || || ||||| ||| | || || | |||| | | |||| |||| Sbjct 2245 AGCAAAGGCTCATCTTCGCAGGAAAGCAACTCGAAGATGGCCGCACCCTTGCCGACTACA 2304 Query 27968 ACATCCAAAAAGAG 27981 ||||||| || ||| Sbjct 2305 ACATCCAGAAGGAG 2318 >seq21431 Length=3066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | ||||||||| ||||| |||| || || ||| | Sbjct 388 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 447 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||||||| || || || || | || ||| | Sbjct 448 GATACAATTGACAAT--GTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATC 505 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || |||||||| || |||||||| || | || | | | | ||||| | Sbjct 506 AGCAGAGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATA 565 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || || ||| ||| | || |||||| | || | ||||| || Sbjct 566 ATATTCAGAAGGAGTCTACTCTTCACTTGGTTCTCCGCCTTCGTGGTGG 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355398333189000