Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13002 109 5e-19 seq91609 102 7e-17 seq97783 82.4 7e-11 seq83573 82.4 7e-11 seq25263 82.4 7e-11 >seq13002 Length=8172 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| ||| || || || || || ||||| || || ||| |||| || Sbjct 5167 CACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTCCGTCCGTCCTC 5108 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || ||||| || || || ||||||||||| | || | || ||| |||||| Sbjct 5107 CAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 5048 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || ||||||||| |||| ||||| | | Sbjct 5047 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 4989 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | |||||||| ||||| || || || |||||| Sbjct 4988 TCCCCGTCAGGGTTTTCACGAATATCTGCATC 4957 >seq91609 Length=4479 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| ||| || || || || || |||||||| || || |||| || Sbjct 226 CACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTC 167 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || ||||| || || || ||||||||||| | || | || ||| |||||| Sbjct 166 CAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 107 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | | | | ||| || || ||||| || | ||||| |||| Sbjct 106 GATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCACCTCAAGGGTGATCGTTTT 47 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||| || || ||||| |||||||| ||||| ||| Sbjct 46 TCCTGTTAGGGTTTTTACAAAGATCTGCATTTTT 13 >seq97783 Length=4057 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 39055 AAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG 39114 ||||| || | || || | |||| ||| || || ||| || |||||||||||||| Sbjct 142 AAGCCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCT 201 Query 39115 GCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGT 39173 ||||| || || | || || | |||||| || ||||| || || | |||||||| |||| Sbjct 202 GCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGT 261 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 ||| | | ||| || ||| ||||| || | | | | ||||| ||| Sbjct 262 GGG-ATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCT--- 317 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||| || | |||||| | || ||||||| || || ||||| || ||||| Sbjct 318 CTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 371 >seq83573 Length=2953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 39055 AAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG 39114 ||||| || | || || | |||| ||| || || ||| || |||||||||||||| Sbjct 2812 AAGCCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCT 2753 Query 39115 GCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGT 39173 ||||| || || | || || | |||||| || ||||| || || | |||||||| |||| Sbjct 2752 GCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGT 2693 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 ||| | | ||| || ||| ||||| || | | | | ||||| ||| Sbjct 2692 GGG-ATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCT--- 2637 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||| || | |||||| | || ||||||| || || ||||| || ||||| Sbjct 2636 CTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 2583 >seq25263 Length=4349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 39055 AAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG 39114 ||||| || | || || | |||| ||| || || ||| || |||||||||||||| Sbjct 142 AAGCCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCT 201 Query 39115 GCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGT 39173 ||||| || || | || || | |||||| || ||||| || || | |||||||| |||| Sbjct 202 GCAAGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGT 261 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 ||| | | ||| || ||| ||||| || | | | | ||||| ||| Sbjct 262 GGG-ATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCT--- 317 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||| || | |||||| | || ||||||| || || ||||| || ||||| Sbjct 318 CTCCACTTCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCAT 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428985445691000