Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq91609 109 4e-19 seq101539 102 6e-17 seq78223 102 6e-17 seq97783 100 2e-16 seq25263 100 2e-16 seq100029 98.7 7e-16 seq84028 95.1 8e-15 seq95352 89.7 3e-13 seq83573 86.0 4e-12 seq64505 86.0 4e-12 >seq91609 Length=4479 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||||| || |||||||||||||| || || || || || Sbjct 14 AAAATGCAGATCTTTGTAAAAACCCTAACAGGAAAAACGATCACCCTTGAGGTGGAATCT 73 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || || ||||| || || | ||||| || Sbjct 74 TCGGACACGATCGACAATGTGAAGGC-CAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 132 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || || || || || || ||||| |||| ||||| | | ||| || Sbjct 133 CCAGCAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTA 192 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| || || ||||| || | ||| | || | |||||| | || ||| Sbjct 193 CAACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGGA 244 >seq101539 Length=5526 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| ||||| || ||||| ||||| || || | | Sbjct 2860 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCA 2801 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| |||||| | || ||||| || Sbjct 2800 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 2741 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || || || || | || ||| | | || |||||| Sbjct 2740 CAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAAC 2681 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || ||||| || | ||||| || Sbjct 2680 ATACAGAAGGAGTCTACCCTTCATTTGGT 2652 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||||| || ||||| || ||||| | || ||||| | | Sbjct 2217 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTC 2158 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| |||| | || || || ||||| | || || |||| Sbjct 2157 CGACACCATTGATAATGTGAAAGCAAAGA-TTCAAGATAAGGAAGGGATCCCACCGGATC 2099 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || |||| || | || ||| | | ||||||| Sbjct 2098 AGCAGAGGTTGATCTTTGCAGGTAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACA 2039 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 |||| || || ||||| || | || || ||| | | |||| ||||||| Sbjct 2038 ACATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGGAT 1988 >seq78223 Length=3817 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 2219 ATGCAGATTTTTGTCAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCC 2160 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||| | || || || ||||| | || || ||||| Sbjct 2159 GACACCATTGATAATGTGAAAGCAAAGA-TTCAAGATAAGGAAGGGATCCCACCGGATCA 2101 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || |||| || | || ||| | | |||||||| Sbjct 2100 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAA 2041 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 ||| || || ||||| || | || || ||| | | |||| ||||||| Sbjct 2040 CATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGGAT 1991 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| || || || || | | Sbjct 2447 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAAAGCTCA 2388 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | | || || ||||| | || ||||| || Sbjct 2387 GACACCATTGACAACGTTAAGGCCAAGA-TCCAAGATAAGGAAGGCATCCCCCCAGACCA 2329 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||||||||| || || || || | |||||| | | || || || Sbjct 2328 GCAAAGACTTATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACTCTTGCAGACTATAA 2269 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || |||| || || Sbjct 2268 CATTCAGAAAGAGTCTACTCTACACTTGGT 2239 >seq97783 Length=4057 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||||||||||||||| || || || || || ||||| | | Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || ||| || || || ||| |||| || ||||| Sbjct 768 CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCA 709 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||||| || || | ||||||| | | || ||||| Sbjct 708 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAA 649 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 648 CATCCAGAAGGAGTCTAC 631 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| || || || || | | Sbjct 1055 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTCC 996 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || ||||| || Sbjct 995 GACACCATCGACAATGTCAAGGC-TAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 937 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || |||| ||||| | | ||| ||||| Sbjct 936 GCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 877 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 876 CATCCAGAAAGAGTCTAC 859 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||| | || || |||||||| || || || ||||| | | Sbjct 600 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 541 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | || | || | | |||||||| ||| | || || || | Sbjct 540 CGATACTATCGACAATGTGAAGGCGAAGA-TCCAGGACAAAGAGGGTATTCCCCCGGACC 482 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||||||||| || || || |||| ||||| | | ||||||| Sbjct 481 AGCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACA 422 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || ||||| || Sbjct 421 ATATCCAGAAGGAGTCAAC 403 >seq25263 Length=4349 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||||||||||||||| || || || || || ||||| | | Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || ||| || || || ||| |||| || ||||| Sbjct 768 CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCA 709 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||||| || || | ||||||| | | || ||||| Sbjct 708 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAA 649 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 648 CATCCAGAAGGAGTCTAC 631 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||| | || || |||||||| || || || ||||| | | Sbjct 600 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 541 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | || | || | | |||||||| ||| | || || || | Sbjct 540 CGATACTATCGACAATGTGAAGGCGAAGA-TCCAGGACAAAGAGGGTATTCCCCCGGACC 482 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||||||||| || || || |||| ||||| | | ||||||| Sbjct 481 AGCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACA 422 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || ||||| || Sbjct 421 ATATCCAGAAGGAGTCAAC 403 >seq100029 Length=1069 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| ||||| || ||||| ||||| || || | | Sbjct 160 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCA 219 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| |||||| | || ||||| || Sbjct 220 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 279 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || || || || | || ||| | | || |||||| Sbjct 280 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAAC 339 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || ||||| || | ||||| || Sbjct 340 ATACAGAAGGAGTCTACCCTTCATTTGGT 368 >seq84028 Length=6065 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || |||||||| || || || || | | Sbjct 3178 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTGGAAAGCTCC 3237 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| ||||| |||||||| || | || || || || Sbjct 3238 GACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCAG 3297 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || || || || ||||| ||||||| ||||| | | ||||||||| Sbjct 3298 CAAAGGCTCATCTTCGCGGGGAAGCAACTCGAAGACGGCCGCACCCTCGCTGATTACAAC 3357 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 3358 ATCCAAAAGGAGTCGAC 3374 >seq95352 Length=5640 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||| | || || ||||| || ||||| || || || | | Sbjct 34 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 93 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||||| | || || || || | || |||||||| Sbjct 94 GATACAATTGACAATGTGAAGGCAAAAA-TACAGGATAAGGAGGGGATCCCACCAGATCA 152 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||| |||| || | | ||||| | |||||||| Sbjct 153 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGGAGGACTTTGGCTGATTACAA 212 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 213 CATCCAAAAGGAGTCGAC 230 >seq83573 Length=2953 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||| | || || |||||||| || || || ||||| | | Sbjct 2354 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 2413 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | || | || | | |||||||| ||| | || || || | Sbjct 2414 CGATACTATCGACAATGTGAAGGCGAAGA-TCCAGGACAAAGAGGGTATTCCCCCGGACC 2472 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||||||||| || || || |||| ||||| | | ||||||| Sbjct 2473 AGCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACA 2532 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || ||||| || Sbjct 2533 ATATCCAGAAGGAGTCAAC 2551 >seq64505 Length=10574 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||||||||| | || || ||||||||| | || || ||||| ||||||||||| ||| Sbjct 3929 GACAAAGAAGGGATCCCACCTGATCAACAGAGGTTGATTTTTGCGGGCAAACAACTTGAA 3870 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || | | || |||||||| || || ||||| || | ||| | ||| | Sbjct 3869 GATGGCCGAACCCTTGCGGACTACAACATTCAGAAGGAGTCGACTCTTCATCTTGTTCTG 3810 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||||||| Sbjct 3809 AGGCTCAGAGGAGGA 3795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337568814356000