Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12357 116 5e-21 seq10414 116 5e-21 >seq12357 Length=26847 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | ||| |||| ||| |||| | || ||| ||||| ||||| Sbjct 18131 ACCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACC 18072 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||||| || |||||||||||| |||||| || ||| | || || ||||| |||||| Sbjct 18071 ATTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGA 18012 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| || | || || ||||| ||||| ||||| Sbjct 18011 GACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGAT 17952 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || |||||||| ||||| | ||||| ||||| Sbjct 17951 TCCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 17910 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||| || | || | ||||||||| | |||||| |||| |||| || Sbjct 18896 CTGTCTTTCATACTGCATGTACAAATCTTCAAATTCTTTACCCCAACAATCAGCCAAGCC 18837 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 ||| | ||| ||||||| | ||| ||||| | ||| | | || ||||| || ||||| Sbjct 18836 AGGAGACTCACTTGGGCAAAACAAAGACCATTGCTCAT-TACTTTGAACTCTTTGCATAA 18778 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||| | ||| |||||| ||||| ||| | | || || ||||| Sbjct 18777 AGAGATCAGGCACCCAAAGAGCATAAAATAAATCCCTTGCTCGGTGCTCTTC 18726 >seq10414 Length=13365 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | ||| |||| ||| |||| | || ||| ||||| ||||| Sbjct 4649 ACCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACC 4590 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||||| || |||||||||||| |||||| || ||| | || || ||||| |||||| Sbjct 4589 ATTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGA 4530 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| || | || || ||||| ||||| ||||| Sbjct 4529 GACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGAT 4470 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || |||||||| ||||| | ||||| ||||| Sbjct 4469 TCCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 4428 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||| || | || | ||||||||| | |||||| |||| |||| || Sbjct 5414 CTGTCTTTCATACTGCATGTACAAATCTTCAAATTCTTTACCCCAACAATCAGCCAAGCC 5355 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 ||| | ||| ||||||| | ||| ||||| | ||| | | || ||||| || ||||| Sbjct 5354 AGGAGACTCACTTGGGCAAAACAAAGACCATTGCTCAT-TACTTTGAACTCTTTGCATAA 5296 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||| | ||| |||||| ||||| ||| | | || || ||||| Sbjct 5295 AGAGATCAGGCACCCAAAGAGCATAAAATAAATCCCTTGCTCGGTGCTCTTC 5244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693739680480000