Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12357 104 3e-17 seq10414 104 3e-17 >seq12357 Length=26847 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | |||||||| ||| |||| | || ||| ||||| || || Sbjct 18131 ACCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACC 18072 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 ||||| || |||||||||||| |||||| || ||| || || ||||| ||| || Sbjct 18071 ATTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGA 18012 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || || || | ||||| ||||| || |||||||| Sbjct 18011 GACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGAT 17952 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || || ||||| ||||| | ||||| ||||| Sbjct 17951 TCCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 17910 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | ||| || ||||||||||||||||| | | ||| | |||| Sbjct 17723 GTCCCAGCATTGAAAAGTGTGGGGGATGCATGAGTGAACCACCTCTGAGACATCAGATGA 17664 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| || || | || ||||| || ||| || ||||||| || | ||| ||| Sbjct 17663 TATGTCCTTATGACAGAATCGATATCATCTTTATGTATCCCTACAGATACTCTCATTAAC 17604 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || || || ||| ||| | || ||||||| ||| ||| | || | | Sbjct 17603 ATGTGTTGCGGCCGCTCCACAACCTTTCCTTGGATCTTCAACAGGTAGGATCTCTCAAGA 17544 Query 77174 GTTTTAAAACCAAAATAGT 77192 ||||| |||||||| |||| Sbjct 17543 GTTTTGAAACCAAAGTAGT 17525 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || ||||||||| || | || || ||||||||| | |||||| |||| |||| || Sbjct 18896 CTGTCTTTCATACTGCATGTACAAATCTTCAAATTCTTTACCCCAACAATCAGCCAAGCC 18837 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 |||| | ||| | || || | ||| ||||| | ||| | | || ||| | || ||||| Sbjct 18836 AGGAGACTCACTTGGGCAAAACAAAGACCATTGCTCAT-TACTTTGAACTCTTTGCATAA 18778 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 |||||||||| | ||| |||||| ||||| ||| Sbjct 18777 AGAGATCAGGCACCCAAAGAGCATAAAATAAATC 18744 >seq10414 Length=13365 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | |||||||| ||| |||| | || ||| ||||| || || Sbjct 4649 ACCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACC 4590 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 ||||| || |||||||||||| |||||| || ||| || || ||||| ||| || Sbjct 4589 ATTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGA 4530 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || || || | ||||| ||||| || |||||||| Sbjct 4529 GACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGAT 4470 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || || ||||| ||||| | ||||| ||||| Sbjct 4469 TCCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 4428 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | ||| || ||||||||||||||||| | | ||| | |||| Sbjct 4241 GTCCCAGCATTGAAAAGTGTGGGGGATGCATGAGTGAACCACCTCTGAGACATCAGATGA 4182 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| || || | || ||||| || ||| || ||||||| || | ||| ||| Sbjct 4181 TATGTCCTTATGACAGAATCGATATCATCTTTATGTATCCCTACAGATACTCTCATTAAC 4122 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || || || ||| ||| | || ||||||| ||| ||| | || | | Sbjct 4121 ATGTGTTGCGGCCGCTCCACAACCTTTCCTTGGATCTTCAACAGGTAGGATCTCTCAAGA 4062 Query 77174 GTTTTAAAACCAAAATAGT 77192 ||||| |||||||| |||| Sbjct 4061 GTTTTGAAACCAAAGTAGT 4043 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || ||||||||| || | || || ||||||||| | |||||| |||| |||| || Sbjct 5414 CTGTCTTTCATACTGCATGTACAAATCTTCAAATTCTTTACCCCAACAATCAGCCAAGCC 5355 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 |||| | ||| | || || | ||| ||||| | ||| | | || ||| | || ||||| Sbjct 5354 AGGAGACTCACTTGGGCAAAACAAAGACCATTGCTCAT-TACTTTGAACTCTTTGCATAA 5296 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 |||||||||| | ||| |||||| ||||| ||| Sbjct 5295 AGAGATCAGGCACCCAAAGAGCATAAAATAAATC 5262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711980850240000