Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq97783 84.2 2e-11 seq83573 84.2 2e-11 seq25263 84.2 2e-11 >seq97783 Length=4057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| |||||||| || || ||||| || || || || ||| | ||| ||| | Sbjct 372 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 313 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATC 111217 ||| | ||| | || || |||||| || || || || | |||| || | | Sbjct 312 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGG-GATCCCACCGGACC 254 Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277 | || ||||| |||| ||| || ||||| ||||||||| ||| | || ||||||| Sbjct 253 AGCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATA 194 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||||||| || || || || || ||| | || | ||||| || |||||| Sbjct 193 ATATACAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTACGTGGTGGC 144 >seq83573 Length=2953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| |||||||| || || ||||| || || || || ||| | ||| ||| | Sbjct 2582 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 2641 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATC 111217 ||| | ||| | || || |||||| || || || || | |||| || | | Sbjct 2642 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGG-GATCCCACCGGACC 2700 Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277 | || ||||| |||| ||| || ||||| ||||||||| ||| | || ||||||| Sbjct 2701 AGCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATA 2760 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||||||| || || || || || ||| | || | ||||| || |||||| Sbjct 2761 ATATACAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTACGTGGTGGC 2810 >seq25263 Length=4349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| |||||||| || || ||||| || || || || ||| | ||| ||| | Sbjct 372 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 313 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATC 111217 ||| | ||| | || || |||||| || || || || | |||| || | | Sbjct 312 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGG-GATCCCACCGGACC 254 Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277 | || ||||| |||| ||| || ||||| ||||||||| ||| | || ||||||| Sbjct 253 AGCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATA 194 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||||||| || || || || || ||| | || | ||||| || |||||| Sbjct 193 ATATACAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTACGTGGTGGC 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421261131832000