Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq13002 161 9e-35 seq91609 149 6e-31 seq100029 127 2e-24 seq97783 116 3e-21 seq83573 116 3e-21 seq25263 116 3e-21 seq101539 114 1e-20 seq78223 93.3 4e-14 >seq13002 Length=8172 Score = 161 bits (178), Expect = 9e-35 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||||||| ||||||||| ||||| ||||||| ||| || || |||| || Sbjct 5167 CACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTCCGTCCGTCCTC 5108 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| || ||||| ||||||||||| ||||||| || | || |||||||||| | Sbjct 5107 CAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-T 5049 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || || | ||| | | | ||||| |||||||||||||| || ||||| | Sbjct 5048 GGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 4989 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||||||| || || ||||| |||||||| Sbjct 4988 TCCCCGTCAGGGTTTTCACGAATATCTGCAT 4958 >seq91609 Length=4479 Score = 149 bits (164), Expect = 6e-31 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||||||| ||||||||| ||||| ||||||| |||||||| |||| || Sbjct 226 CACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTC 167 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| || ||||| ||||||||||| ||||||| || | || |||||||||| Sbjct 166 CAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 107 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || |||| || | | | ||||| || |||||||| | || ||||||| Sbjct 106 GATCTTGGCCTTC-ACATTGTCGATCGTGTCCGAAGATTCCACCTCAAGGGTGATCGTTT 48 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || || || ||||| || |||||||| || Sbjct 47 TTCCTGTTAGGGTTTTTACAAAGATCTGCATTTT 14 >seq100029 Length=1069 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||| |||| |||||| || || || ||||||||| ||||| ||||||| Sbjct 614 CCGCCACATAGGCGTAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 555 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || || || || || | ||| ||||| | ||| Sbjct 554 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGGGGG 495 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||| ||| || | || || | |||| | | | ||||| ||| ||| Sbjct 494 ATGCCCTCCTTATCC-TGGATCTTAGCCTTAACGTTGTCAATGGTGTCAGAGCT---CTC 439 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | ||||| || || || || |||||||| ||||| |||||||| Sbjct 438 AACCTCTAGGGTTATGGTCTTTCCTGTGAGCGTCTTGACGAAGATCTGCAT 388 Score = 100 bits (110), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| ||| || || ||||||||| ||||| ||||| | || || || | Sbjct 375 ACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCAAGAGTACGACC 316 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || ||||||||||| ||||| || || | ||| ||||| | ||| | | ||||| Sbjct 315 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGGATACCTTCCTT 256 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCG 41822 |||| ||| | || || | ||| | | | ||||| ||| ||||||||| | | Sbjct 255 GTCC-TGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCT---CTCCACCTCGAGGG 200 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || || || || || ||||| ||||| ||||||||| Sbjct 199 TGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATG 159 >seq97783 Length=4057 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| || || || || | Sbjct 373 CCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCA 432 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||||||||| || || || | ||| ||||||| |||| Sbjct 433 AGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGA 492 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| || |||| || | | | ||| ||| ||| || Sbjct 493 ATACCCTCTTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATAGTATCGGAGCTCTCAAC 551 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || |||||||| || |||| ||||||||||| |||||||| Sbjct 552 CTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCAT 599 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| || || || ||| ||||| ||||| ||||||| |||||||| Sbjct 838 AGTCGAAGCACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGGGTGCGG 897 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| ||||||||||| ||||| || || || | ||| ||||| | ||| | | ||| Sbjct 898 CCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCTTCC 957 Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822 ||||| ||| || ||| || | || | |||||| ||| ||||| | | Sbjct 958 TTGTCTTGGATCTTAGCCTTGACATTGTCG--ATGGTGTCGGAGCTCTCGACCTCAAGGG 1015 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || || || || || || || |||||||| Sbjct 1016 TGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1055 >seq83573 Length=2953 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| || || || || | Sbjct 2581 CCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCA 2522 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||||||||| || || || | ||| ||||||| |||| Sbjct 2521 AGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGA 2462 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| || |||| || | | | ||| ||| ||| || Sbjct 2461 ATACCCTCTTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATAGTATCGGAGCTCTCAAC 2403 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || |||||||| || |||| ||||||||||| |||||||| Sbjct 2402 CTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCAT 2355 >seq25263 Length=4349 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| || || || || | Sbjct 373 CCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCA 432 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||||||||| || || || | ||| ||||||| |||| Sbjct 433 AGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGA 492 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| || |||| || | | | ||| ||| ||| || Sbjct 493 ATACCCTCTTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATAGTATCGGAGCTCTCAAC 551 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || |||||||| || |||| ||||||||||| |||||||| Sbjct 552 CTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCAT 599 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| || || || ||||||||| ||||| ||||||| |||||||| Sbjct 838 AGTCGAAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGA 897 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| ||||| || || || | ||| ||||||| || | | || Sbjct 898 CCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATACCTTCT 957 Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822 |||||| |||||| ||| || | ||| ||||| |||||||| | | Sbjct 958 TTGTCCTGGATTTTAGCCTTGACATTGTCGATC--GTGTCAGAACTTTCCACCTCAAGGG 1015 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || ||||| || ||||| || || ||||||||||| Sbjct 1016 TGATGGTCTTACCGGTAAGCGTTTTCACAAAAATCTGCAT 1055 >seq101539 Length=5526 Score = 114 bits (126), Expect = 1e-20 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || || ||||||||| ||||| ||||||| |||||||| | || || Sbjct 2423 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTC 2482 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||| ||||| || || || | ||| ||||| | ||| | || |||||| ||| | Sbjct 2483 GAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCC-T 2541 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCG 41828 | | || || | |||| | | | ||||| ||| ||| ||||| | ||||| | Sbjct 2542 GGATCTTAGCCTTAACGTTGTCAATGGTGTCAGAGCT---CTCAACCTCTAGGGTTATGG 2598 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || |||||||| ||||| |||||||| Sbjct 2599 TCTTTCCTGTGAGCGTCTTGACGAAGATCTGCAT 2632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| ||| || || ||||||||| ||||| ||||| | || || || | Sbjct 2645 ACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCAAGAGTACGACC 2704 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || ||||||||||| || || || || | ||| ||||| | ||| | | ||||| Sbjct 2705 ATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCTTCCTT 2764 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCG 41822 |||| ||| | || || | ||| | | | ||||| ||| ||||||||| | | Sbjct 2765 GTCC-TGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCT---CTCCACCTCGAGGG 2820 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || || || || || ||||| ||||| ||||||||| Sbjct 2821 TGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATG 2861 >seq78223 Length=3817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||||| ||||||||||||||| || || | Sbjct 1993 CCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCC 2052 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || || || | || || | |||||| ||||| || |||| | ||| || ||| | ||| Sbjct 2053 AGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGG 2112 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || ||||| | | ||| | ||||||| || | | |||||| ||| | Sbjct 2113 ATCCCT-TCCTTAT-CTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAA 2170 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || |||| |||||| || ||||||||||| Sbjct 2171 CCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || ||||| || | ||||| || || || ||| ||||||||||||||||| | Sbjct 2221 CCACCACGTAGGCGGAGCACCAAGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGCA 2280 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||||||||| || || || | || ||||| | ||| Sbjct 2281 AGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATAAGTCTTTGCTGGTCTGGGGGG 2340 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||| | | || | || || | |||| | | | ||||| ||| || Sbjct 2341 ATGCCTTCCTTAT-CTTGGATCTTGGCCTTAACGTTGTCAATGGTGTCTGAGCT---TTC 2396 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || || || || || || || |||||||| Sbjct 2397 GACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461685668400000