Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq20 168 7e-37 seq504 122 9e-23 >seq20 Length=956477 Score = 168 bits (186), Expect = 7e-37 Identities = 394/584 (67%), Gaps = 13/584 (2%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAAT 17017 ||| || ||||||||||| || | || ||||| | || |||| | ||||| || || Sbjct 870742 CAGGCACGCGAAATCGCAGTGCAGACCTTCGTCAC-GC-GATATCAACTCGTTCGAGAAA 870799 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 |||||||| |||||| || || ||||| | ||| ||||| ||| ||| || || Sbjct 870800 GTCAACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGGCGCAGAAGCTTCCGGAG 870859 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 |||||||| || || ||| | || |||||||||| || |||||| | | || | | Sbjct 870860 AAGAATATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCCGCCG 870919 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | ||| |||| | |||| | ||| || || | ||| | || || || Sbjct 870920 T--CGA-TCCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATT 870976 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGG--TCGATTATATACGTATCGATGAGTAGGC 17255 || || | || || ||| || || || |||| || | |||| ||| |||| Sbjct 870977 GCGCGGAAGAGC--CTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGC 871034 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||||||||| || || || ||||| || ||||| ||| ||||||| Sbjct 871035 TGTACATCTCGGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTT 871094 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 ||| || || || ||| ||| ||| | ||||| ||||| |||||||||||| Sbjct 871095 CCGAGATCTGCACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGG 871154 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTA-AGAACG 17434 |||||||| || |||| | || || ||||||| || |||| ||||| | || Sbjct 871155 AGGCGGCGAAGAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGT-CGGTGGATAGGGTT 871213 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | || | ||| | ||| ||||| |||| |||||| || || | Sbjct 871214 TCCCAGTGGCGGAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCG 871273 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||||||| ||||| | |||||| | |||||| || || || Sbjct 871274 GCCTTTTTGTACATCTCCCAAATTTGTGGGTATTGAATTGGAAA 871317 >seq504 Length=2204878 Score = 122 bits (134), Expect = 9e-23 Identities = 301/456 (66%), Gaps = 3/456 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| ||| || ||||||||||| || || |||||||| | || | ||||| || | Sbjct 1297549 ACAGCAGGCACGCGAAATCGCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGA 1297608 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||||||| |||||| || || ||||| | ||| || || ||| ||| || | Sbjct 1297609 AAGTCAACCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTTCCGG 1297668 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | |||||||| ||||| ||| | || || |||| | ||| || ||| | | || Sbjct 1297669 AGAAGAATATTCCCTCCACGCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAGC 1297728 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || | ||||| || |||| | ||| || | || | ||| | ||||| | Sbjct 1297729 CGTCA---ATCCAGCGGAGCGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGA 1297785 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || || | | | || ||| ||| | || || | |||| ||| || | Sbjct 1297786 TTGCGCGGAAGAGGTGGTTCTTCTCCGACGAGTCCTTGATGTAAGCCTCGAGGAGGAGAC 1297845 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| ||||| || || || ||||| ||| ||||| | Sbjct 1297846 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCT 1297905 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | || || || ||| ||| ||| | || ||||| || |||||||||||| Sbjct 1297906 CTGAGATCTGGACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCCGTCGG 1297965 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 |||||||| || || | | || || ||||||| Sbjct 1297966 AGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAAT 1298001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531289864160