Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20 140 4e-28 seq504 138 1e-27 seq848 107 2e-18 >seq20 Length=956477 Score = 140 bits (154), Expect = 4e-28 Identities = 378/576 (66%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||| ||||| ||||| | || || ||||| || || || | Sbjct 870746 CACGCGAAATCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCAAC 870805 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| || || ||||| || ||||| ||||||| |||| | | | || || ||||| Sbjct 870806 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 870864 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 || ||||| || || || || || | | || | ||| ||| | | | || Sbjct 870865 TATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCCGCCGTCGAT 870924 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| | ||||||| ||||||| | | || || || | ||||| || || || Sbjct 870925 CCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCGGAA 870984 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 ||| ||| || || | ||| || | || | || | | || || ||||| || Sbjct 870985 GAGCCTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGCTGTACATCTC 871044 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 || || |||||||| || || || || || |||||||| | || || | ||||| Sbjct 871045 GGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTTCCGAGATCTG 871104 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 || || | || ||| | |||| ||||| || || ||||| ||| || || Sbjct 871105 CACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGCGAA 871164 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 || |||| || ||||| || |||| || ||||| | | ||| | | ||| | Sbjct 871165 GAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTGGCG 871224 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 || || | || | ||| ||||| || | ||||| || || || || |||||||| || Sbjct 871225 GAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTA 871284 Query 24674 CATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 ||| | ||| || | | |||||||||||||| || Sbjct 871285 CATCTCCCAAATTTGTGGGTATTGAATTGGAAACAT 871320 >seq504 Length=2204878 Score = 138 bits (152), Expect = 1e-27 Identities = 389/589 (66%), Gaps = 10/589 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| || || |||||||||||||| | ||||||||| | | |||||| ||||| || | Sbjct 1297549 ACAGCAGGCACGCGAAATCGCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGA 1297608 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | || | || ||||| || || ||||| || ||||| || |||| |||| || ||| Sbjct 1297609 AAGTCAACCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGCTTCCG 1297667 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--AT-AACCGGCG 24302 || ||||| ||||| || || || ||||| | || || ||| | || | ||| | Sbjct 1297668 GAGAAGAATATTCCCTCCACGCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAG 1297727 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | |||| ||||| | ||||||| ||||||||| | || || || | || || Sbjct 1297728 CCGTCA---ATCCAGCGGAGCGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCG 1297784 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAG 24421 || || ||||| | ||| || || || | || || | || | || | | || Sbjct 1297785 ATTGCGCGGAAGAGGTGGTTCTTCTC-CGACGAGTCCTTGATGTAAGCCTCGAGGAGGAG 1297843 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||| ||||| || || || ||||| || ||||| ||||| || |||||||| | || Sbjct 1297844 ACTGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGC 1297903 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 ||| | ||||| || || | || ||| | || | ||| || || || ||||| Sbjct 1297904 CTCTGAGATCTGGACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCCGTC 1297963 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601 ||| || || || || | || ||||| || |||| | ||| | | | || | Sbjct 1297964 GGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAATGCTGCTCGCCGGAGGAGAGGGT 1298023 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 ||| | || || | || | ||| ||||| || | ||||| || || || | Sbjct 1298024 TACCCAGTGGCGGAGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTG 1298083 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 || || || ||||| | |||||| ||| |||| ||||| || || ||| Sbjct 1298084 GGCTTTCTTGTACATCTCCCAGATTTCAGGATACTGAATCGGGAACATA 1298132 >seq848 Length=4381129 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| |||||||| | || ||||| || || || |||||| || ||| | |||| | Sbjct 3844255 GTTCCAGCATTAAAAAGAGTCGGAGATGCATGAGTGAACCATCGTTGAGACAACAGATGG 3844314 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 ||||| | ||| ||| ||| ||||| || || || || || | || | ||||||| Sbjct 3844315 TACGTTTTTATAACTGCGTCGATATCATCTTTGTGTATACCAACAGAAACTCTCATTAAC 3844374 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||||||||| |||||||| | ||| | | || || | ||| || |||| | Sbjct 3844375 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGGACCTTTAGGAGGTAAGACCTTTCGAGC 3844434 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| |||||||| | | |||| |||||||| || || || || Sbjct 3844435 GTTTTGAAACCAAAGAAATCGTATTCAAAGTCTCTGTCATATATTAT 3844481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593705183597760