Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2167 109 5e-19 seq310 102 7e-17 seq582 89.7 4e-13 >seq2167 Length=1051226 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| |||||||| || || || ||||| ||| ||| || Sbjct 204214 ATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCA 204155 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| ||||| || |||||||| | || || || Sbjct 204154 GACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCAG 204095 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| |||||||| || || || || |||||| || ||| |||| ||||||||| Sbjct 204094 CAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAGAACGCTGGCTGATTACAAT 204035 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 |||||||| ||||| ||||| ||| | ||| || Sbjct 204034 ATTCAGAAAGAATCGACTCTCCACCTTGTGCTA 204002 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| |||| |||||||| || || || ||||| ||| ||| || Sbjct 211401 ATGCAGATATTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTTGAAAGTTCA 211342 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| |||||| || |||||||| | || ||||| Sbjct 211341 GACACTATCGATAATGTTAAAGCGAAAATTCAGGACAAAGAAGGGATTCCTCCGGATCAG 211282 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||||| |||||| ||| | || ||||||||| Sbjct 211281 CAAAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGGCGAACCCTCGCGGATTACAAT 211222 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||| || ||||| || ||| Sbjct 211221 ATCCAGAAAGAGTCTACACTACAC 211198 >seq310 Length=2395884 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || || || || |||||| ||| ||| | || Sbjct 1996520 ATGCAAATCTTTGTGAAAACCCTCACCGGAAAGACAATTACCCTTGAAGTCGAAAGCTCA 1996579 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||||||| ||||| || || | || ||| || Sbjct 1996580 GACACCATTGACAATGTCAAGGCAAAAATTCAAGATAAGGAGGGAATTCCTCCAGACCAG 1996639 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| || || |||||||||||| || ||| | || ||||||||| Sbjct 1996640 CAGAGATTGATATTTGCTGGGAAGCAACTGGAAGATGGCAGAACCCTTGCAGATTACAAT 1996699 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || |||||||||||||| ||||| | ||| | || || |||| ||| Sbjct 1996700 ATCCAGAAGGAATCTACCCTTCATCTCGTGCTGCGTTT--GAGGGGGG 1996745 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || ||||||||||| || ||| | || Sbjct 1996976 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAAACCATTACATTGGAGGTTGAAAGCTCA 1997035 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||||| || || || || | || ||| || Sbjct 1997036 GACACCATCGATAACGTGAAGGCAAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 1997095 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || ||||||||||| |||||| | || |||| ||||||||| Sbjct 1997096 CAGAGATTGATCTTCGCAGGCAAACAACTCGAAGATGGGAGGACCTTGGCAGATTACAAT 1997155 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || |||||||| || || ||||| | || || || || |||| ||| Sbjct 1997156 ATCCAGAAGGAGTCGACCCTTCATCTTGTTTTGCGTTT--GAGGGGGG 1997201 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || || || || || |||| | Sbjct 1997432 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACTATCACTTTGGAGGTGGAAAGTTCT 1997491 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| ||||| ||||||||||| | || |||||| Sbjct 1997492 GATACGATTGACAATGTCAAGGCGAAAATCCAGGATAAAGAAGGGATCCCACCTGATCAA 1997551 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || ||||||||||| ||||| || || |||||| || | || | || ||||| | Sbjct 1997552 CAGAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGTCGTACAC--TTGCGGATTATA 1997609 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||| ||||||||||| || |||||| | ||| Sbjct 1997610 ATATCCAGAAGGAATCCACCCTTCACCTTGTG 1997641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || |||||||| || || || | || Sbjct 1996292 ATGCAAATTTTCGTCAAAACTCTCACCGGTAAAACCATCACTCTTGAGGTTGAGAGCTCA 1996351 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| || ||||| ||||| | ||| || || Sbjct 1996352 GACACAATCGACAATGTAAAGGCAAAGATCCAAGATAAGGAAGGCATCCCCCCTGACCAG 1996411 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| || || ||||| |||||| || ||| | || ||||||||| Sbjct 1996412 CAGAGATTGATTTTTGCTGGTAAGCAACTTGAAGATGGCAGAACCCTTGCAGATTACAAT 1996471 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || |||||||| || || |||||| Sbjct 1996472 ATCCAGAAGGAGTCCACCCTTCAC 1996495 >seq582 Length=2128859 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || || ||||||||| ||| ||| | | Sbjct 298988 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAGACCATTACCCTCGAGGTGGAGAGCTCC 299047 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || || || || || ||| | ||| ||| || Sbjct 299048 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 299107 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| ||||| || || || || || || || | ||| ||||||| ||||| Sbjct 299108 CAGAGACTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTTTGGCCGACTACAAC 299167 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||| ||||| |||||| |||| Sbjct 299168 ATTCAGAAGGAGTCTACCCTTCACTTGGT 299196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428324452596860