Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2167 113 4e-20 seq310 98.7 8e-16 >seq2167 Length=1051226 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || |||||||| || || || || || ||| ||| || Sbjct 203986 ATGCAAATTTTCGTAAAGACATTGACTGGAAAGACAATCACTTTGGAAGTTGAAAGTTCA 203927 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| ||||| || ||||||||| | || ||| || Sbjct 203926 GACACAATCGACAATGTCAAGGCGAAAATCCAGGACAAAGAAGGTATCCCTCCAGACCAG 203867 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| |||||||| || || || | |||||| | ||| | |||||||| || Sbjct 203866 CAAAGACTGATCTTTGCCGGTAAGCAGCTCGAAGATGGTAGAACACTTGCCGATTATAAC 203807 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||| || |||||||| ||||| | ||||| ||||||| Sbjct 203806 ATTCAAAAGGAGTCGACTCTTCATTTGGTGCTGCGATTGAGAGGAGG 203760 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| |||||||| || || || ||||| ||| ||| || Sbjct 204214 ATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCA 204155 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || ||||| || |||||||| | || || || Sbjct 204154 GACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCAG 204095 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| |||||||| || || || | |||||| || ||| |||| ||||||||| Sbjct 204094 CAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAGAACGCTGGCTGATTACAAT 204035 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||||| || ||||| ||||| ||| | ||| || Sbjct 204034 ATTCAGAAAGAATCGACTCTCCACCTTGTGCTA 204002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||| || |||||||| |||||||| || || ||| | ||| Sbjct 204349 GACAAAGAAGGGATCCCTCCAGACCAGCAAAGACTGATCTTTGCCGGAAAGCAACTTGAA 204290 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| |||| |||||||| |||||||||||||| ||||| || | ||||| Sbjct 204289 GATGGTAGAACATTGGCGGATTACAACATTCAAAAGGAATCAACTCTCCATCTTGTGTTG 204230 Query 25248 CGATT 25252 || || Sbjct 204229 CGGTT 204225 >seq310 Length=2395884 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | || || || || |||||| ||| ||| | || Sbjct 1996520 ATGCAAATCTTTGTGAAAACCCTCACCGGAAAGACAATTACCCTTGAAGTCGAAAGCTCA 1996579 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| ||||||| ||||| || || | || ||| || Sbjct 1996580 GACACCATTGACAATGTCAAGGCAAAAATTCAAGATAAGGAGGGAATTCCTCCAGACCAG 1996639 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | || ||||| || || ||| |||||||| || ||| | || ||||||||| Sbjct 1996640 CAGAGATTGATATTTGCTGGGAAGCAACTGGAAGATGGCAGAACCCTTGCAGATTACAAT 1996699 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || ||||||||||| ||||| | ||| | || || |||| ||| Sbjct 1996700 ATCCAGAAGGAATCTACCCTTCATCTCGTGCTGCGTTT--GAGGGGGG 1996745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || || || || || || |||| | Sbjct 1997432 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACTATCACTTTGGAGGTGGAAAGTTCT 1997491 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || ||||| ||||| ||||||||||| | || |||||| Sbjct 1997492 GATACGATTGACAATGTCAAGGCGAAAATCCAGGATAAAGAAGGGATCCCACCTGATCAA 1997551 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || || ||||||||||| ||||| || | |||||| || | || | || ||||| | Sbjct 1997552 CAGAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGTCGTACAC--TTGCGGATTATA 1997609 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 |||| || |||||||| || |||||| | ||| Sbjct 1997610 ATATCCAGAAGGAATCCACCCTTCACCTTGTG 1997641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410785725431768