Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq310 136 6e-27 seq2167 109 8e-19 seq2135 104 4e-17 seq1098 98.7 2e-15 >seq310 Length=2395884 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || || ||||| ||| | ||| | ||| | Sbjct 1997432 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACTATCACTTTGGAGGTGGAAAGTTCT 1997491 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || |||||| || ||||||||||| || |||||||||||| Sbjct 1997492 GATACGATTGACAATGTCAAGGCGAAAATCCAGGATAAAGAAGGGATCCCACCTGATCAA 1997551 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| |||||||| || || |||| ||| |||| ||| | | ||||||||| Sbjct 1997552 CAGAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGTCGTACACTTGCGGATTATAAT 1997611 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || ||||| || | || | || | ||| | || |||||| Sbjct 1997612 ATCCAGAAGGAATCCACCCTTCACCTTGTGCTTCGTCTTCGTGGTGGT 1997659 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| ||||| || |||||||||||| | ||| | || Sbjct 1996064 ATGCAGATATTTGTCAAGACTCTAACCGGAAAAACTATAACTCTCGAGGTCGAGAGTTCC 1996123 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | || ||||| ||||| || ||||| || || ||||| || Sbjct 1996124 GATACAATCGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGACCAG 1996183 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || || || || |||||| | || ||| | |||| | | |||||| || Sbjct 1996184 CAAAGGCTAATCTTCGCTGGCAAACAACTCGAAGATGGCAGAACCCTTGCAGATTACAAC 1996243 Query 124719 ATTCAAAAAGAATCAAC 124735 || ||||| || || || Sbjct 1996244 ATCCAAAAGGAGTCTAC 1996260 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || ||||| || || | ||| ||||| Sbjct 1997204 ATGCAGATTTTTGTCAAGACTTTGACCGGAAAAACCATTACACTGGAGGTTGAAAGTTCA 1997263 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || |||||||||||| || |||||||| || || || || Sbjct 1997264 GACACGATCGACAATGTGAAGGCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 1997323 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || |||||||| || || | || ||| | | ||| | | |||||||||| Sbjct 1997324 CAACGTTTGATCTTTGCAGGTAAGCAGCTCGAAGATGGGAGGACACTTGCAGATTATAAT 1997383 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | ||| ||||||| || || |||| || || Sbjct 1997384 ATCCAAAAGGAGTCGACGCTTCATCTGGTTTTGCGGTTGAGAGGCGGGAT 1997433 >seq2167 Length=1051226 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||||||| | || || || || || ||| | || ||||| Sbjct 203986 ATGCAAATTTTCGTAAAGACATTGACTGGAAAGACAATCACTTTGGAAGTTGAAAGTTCA 203927 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || |||||| || || ||||||||||| || || || || Sbjct 203926 GACACAATCGACAATGTCAAGGCGAAAATCCAGGACAAAGAAGGTATCCCTCCAGACCAG 203867 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| || || || | || ||| || ||||| | | |||||||| Sbjct 203866 CAAAGACTGATCTTTGCCGGTAAGCAGCTCGAAGATGGTAGAACACTTGCCGATTATAAC 203807 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| | |||||||| | || || |||| || || Sbjct 203806 ATTCAAAAGGAGTCGACTCTTCATTTGGTGCTGCGATTGAGAGGAGGAAT 203757 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| || || ||||| || || ||| | ||| | || || | Sbjct 205126 ATGCAGATCTTTGTAAAGACTCTTACCGGCAAGACGATCACTCTCGAGGTCGAGAGTTCA 205067 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || | ||| |||||||||||||| ||||| || || || || || Sbjct 205066 -GATACGATCGACAACGTCAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCA 205008 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || |||||| | || ||| | ||||| | | |||||| || Sbjct 205007 GCAGAGGTTAATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACCCTCGCAGATTACAA 204948 Query 124718 TATTCAAAAAGAATCAAC 124735 ||| ||||||||||| || Sbjct 204947 TATCCAAAAAGAATCTAC 204930 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || ||||||| | || |||||||| || ||| | ||| | || Sbjct 210718 AATGCAAATCTTCGTAAAGACTTTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGTTC 210659 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| ||| | ||| || ||||||||||| ||||| || ||||| || || Sbjct 210658 GGATACAATCGACAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATTCCACCGGACCA 210599 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||| || ||||| || || || | || || | || || | | |||||||| Sbjct 210598 GCAAAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGACGGACGCACGCTTGCCGATTATAA 210539 Query 124718 TATTCAAAAAGAATCAACT 124736 ||| || || || |||||| Sbjct 210538 TATCCAGAAGGAGTCAACT 210520 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| | || |||||||| || ||| | ||| | || Sbjct 203759 AATGCAAATCTTCGTCAAGACTTTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGTTC 203700 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| ||| | ||| || ||||||||||| ||||| || ||||| || || Sbjct 203699 CGATACAATCGACAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATTCCACCGGACCA 203640 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||| || ||||| || ||||| | || || | || || | | |||||||| Sbjct 203639 GCAAAGGCTCATCTTTGCTGGGAAACAGCTCGAAGACGGACGCACGCTTGCCGATTATAA 203580 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || || || || | || | || | ||| | || |||||| Sbjct 203579 TATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTTCGTGGTGGT 203531 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| |||| || || || || || || || ||| | ||| | || ||| | Sbjct 211629 ATGCAGATATTTGTAAAAACTCTTACTGGTAAGACGATCACTCTCGAGGTCGAGAGCTCA 211570 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| | || | || |||||||||||||| ||||| || || || ||||| Sbjct 211569 -GATACCGTAGACAACGTCAAGTCTAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCA 211511 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || |||||| | || || | ||||| | | ||||| || Sbjct 211510 GCAGAGGCTAATCTTTGCTGGGAAACAACTCGAAGACGGGCGAACCCTCGCGGATTACAA 211451 Query 124718 TATTCAAAAAGAATCAAC 124735 ||| || |||||||| || Sbjct 211450 TATCCAGAAAGAATCTAC 211433 >seq2135 Length=1067647 Score = 104 bits (114), Expect = 4e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || || | ||| |||| ||| Sbjct 902505 ATGCAGATTTTTGTCAAGACTCTCACCGGGAAGACCATTACCTTGGAGGTTGAGAGCTCC 902564 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| || |||||||| || ||||| || ||||| || || Sbjct 902565 -GACACTATTGATAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCA 902623 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||| || |||||||| || || || |||||| |||| || | | ||||| || Sbjct 902624 ACAAAGGCTGATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTGCCGATTACAA 902683 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || ||| | || |||||| Sbjct 902684 CATCCAAAAGGAGAGCACTCTTCACTTGGTT 902714 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || || || || || || || | ||| |||| ||| Sbjct 902049 ATGCAGATATTTGTCAAGACTCTCACTGGGAAGACCATTACCTTGGAGGTTGAGAGCTCC 902108 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || |||||||| || ||||| || || || ||||| Sbjct 902109 -GACACTATTGATAACGTCAAAGCCAAGATTCAAGACAAGGAAGGGATTCCCCCGGATCA 902167 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | ||||||||||| || || || |||||| |||| || | | ||||| || Sbjct 902168 GCAGAGGTTGATTTTTGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTGCCGATTACAA 902227 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| ||| ||| | || ||||| Sbjct 902228 CATCCAAAAGGAAAGCACTCTTCACTTGGT 902257 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || || | ||| | || ||| Sbjct 902733 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCC 902792 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | ||| || |||||||| || ||||| || ||||| || || Sbjct 902793 -GACACGATTGACAACGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCA 902851 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || |||||||| || || || |||||| |||| || || | || || || Sbjct 902852 GCAGAGGCTGATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGCACTTTGGCGGACTACAA 902911 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||| || || ||| | || ||||| Sbjct 902912 TATTCAAAAGGAGTCCACTCTTCACTTGGT 902941 >seq1098 Length=1756062 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || |||||||| ||||| ||||| || || ||||| || ||||| || ||||| | Sbjct 778290 TTCAGGACAAAGAAGGAATACCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAGT 778349 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 |||| ||| | |||| || | |||||| ||||| ||||||||||| || Sbjct 778350 TAGAAGATGGCAGAACTTTGGCAGATTACAATATCCAAAAAGAATCGAC 778398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755435111641600