Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2167 116 6e-21 seq1098 104 3e-17 seq310 104 3e-17 seq582 89.7 8e-13 >seq2167 Length=1051226 Score = 116 bits (128), Expect = 6e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| |||| || | |||| ||||| ||||| ||||| ||||| | Sbjct 211175 CCACCACGAAGCCTTAGGACAAGGTGTAGTGTAGACTCTTTCTGGATATTGTAATCCGCG 211234 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | |||||| |||||||| |||||||||||||||||||||||| Sbjct 211235 AGGGTTCGCCCATCTTCGAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 211294 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| || || ||| ||||||||||| ||| Sbjct 211295 ATCCCTTCTTTGTCCTGAATTTTCGCTTTAACATTATCGATAGTGTCTGAACTTTCAACT 211354 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | || || || || || || ||||| || | |||||| ||||| Sbjct 211355 TCCAAAGTAATCGTCTTTCCAGTCAATGTCTTGACGAATATCTGCAT 211401 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| |||| || | || | ||||||||||| ||||| ||||||| Sbjct 204900 CCACCACGAAGCCTTAGGACAAGGTGGAGTGTAGATTCTTTTTGGATATTGTAATCTGCG 204959 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || ||| || | |||||| |||||||| || || || ||||| ||||| ||| Sbjct 204960 AGGGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATTAACCTCTGCTGGTCCGGGGGA 205019 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 205020 ATTCCTTCCTTATCTTG 205036 Score = 104 bits (114), Expect = 3e-17 Identities = 165/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| |||| || | || | ||||||||||| ||||| ||||| | Sbjct 211403 CCACCACGAAGCCTTAGGACAAGGTGGAGTGTAGATTCTTTCTGGATATTGTAATCCGCG 211462 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | || || | |||||| |||||||| || | || ||||||||||||||| Sbjct 211463 AGGGTTCGCCCGTCTTCGAGTTGTTTCCCAGCAAAGATTAGCCTCTGCTGATCCGGAGGA 211522 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| |||||||| || || || Sbjct 211523 ATTCCTTCCTTATCTTGAATTTTAGACTTGACGTTGTCTACGGTATCTGAGCTCTCGACC 211582 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTT--TATTAGAAA 146288 || || ||||| || ||||| || | ||||| | ||||| ||||| | |||| |||| Sbjct 211583 TCGAGAGTGATCGTCTTACCAGTAAGAGTTTTTACAAATATCTGCATCTGATATTCGAAA 211642 Query 146289 AATA 146292 |||| Sbjct 211643 AATA 211646 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | |||||||| || | ||| | ||| |||||||| ||||| ||||| | Sbjct 204442 TTCCACCACGAAGTCTTAGGACAAGATGGAGAGTCGATTCTTTCTGGATATTGTAATCAG 204501 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 || |||| | ||| || | ||| |||||||| || |||||||||||||| || |||| Sbjct 204502 CGAGGGTTCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGAG 204561 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||| || ||||| Sbjct 204562 GGATCCCTTCCTTGTCTTG 204580 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| |||| || | || | ||||||||||| ||||| ||||| | Sbjct 204672 CCACCACGAAGCCTTAGGACAAGGTGGAGTGTAGATTCTTTCTGGATATTGTAATCAGCG 204731 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||| || |||||||| |||||||||||||| ||||||||| Sbjct 204732 AGGGTTCGACCATCTTCGAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGGTCCGGAGGA 204791 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 204792 ATGCCTTCCTTGTCCTG 204808 >seq1098 Length=1756062 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || || || || | || | || |||||||| ||||| |||||| Sbjct 778431 GTTCCACCCCTCAGCCTCAAAACGAGGTGAAGGGTCGATTCTTTTTGGATATTGTAATCT 778372 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | |||||||| ||| ||||| ||||| |||||||| |||| || ||||| || ||| Sbjct 778371 GCCAAAGTTCTGCCATCTTCTAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCAGGA 778312 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 778311 GGTATTCCTTCTTTGTCCTG 778292 >seq310 Length=2395884 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 |||||||| || ||||| ||||||| ||| ||||||| ||| || | ||| || ||| Sbjct 1996716 GTAGATTCCTTCTGGATATTGTAATCTGCAAGGGTTCTGCCATCTTCCAGTTGCTTCCCA 1996657 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| ||||| || ||||||||||| || |||||||| Sbjct 1996656 GCAAATATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTG 1996610 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/182 (69%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||||| ||| ||||||| ||| || | ||| || ||||||||||||||||| Sbjct 1996473 ATATTGTAATCTGCAAGGGTTCTGCCATCTTCAAGTTGCTTACCAGCAAAAATCAATCTC 1996414 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||| || || || || ||||| |||||||| || Sbjct 1996413 TGCTGGTCAGGGGGGATGCCTTCCTTATCTTGGATCTTTGCCTTTACATTGTCGATTGTG 1996354 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| || || || || || ||||| |||||||| || | ||||| | ||| |||||| Sbjct 1996353 TCTGAGCTCTCAACCTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTGACGAAAATTTGC 1996294 Query 146276 AT 146277 || Sbjct 1996293 AT 1996292 >seq582 Length=2128859 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||||| || || || |||||||||| | ||| | | ||| || Sbjct 298968 ACCAAATGCAGTGTAGACTCCTTCTGGATGTTATAATCTGCCAAAGTACGTCCATCCTCG 298909 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||||||||| |||||||||||||||||||| ||||| ||||| || || || Sbjct 298908 AGCTGCTTTCCAGCAAAGATCAATCTTTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 298850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743505841495040