Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq504 158 2e-33 seq20 149 8e-31 seq848 104 3e-17 seq1991 86.0 8e-12 >seq504 Length=2204878 Score = 158 bits (174), Expect = 2e-33 Identities = 568/876 (65%), Gaps = 18/876 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || ||||| || || | || || || || || ||||| |||| ||| || Sbjct 1297266 TTCTGATATTCTCCAACCCTCTTCTCAAAGAAGTTTGTTTTACCTTGCAAGCTAATCAGC 1297325 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| ||||| |||||||| || || | |||||||| || | | Sbjct 1297326 TCCATCCAATCAAATGGATTCTGCACATTGTACATCTTCCCACATCCCAATGCATTCAGC 1297385 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 ||||||||||| || ||||| || || |||||||||| | ||||| || | | Sbjct 1297386 AATCTATCTGCTACAAATTCAATGTACTGGCTCATCATTTCTCCGTTCATCCCCACCAAC 1297445 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 || || || || | ||| || ||| || ||||| || | | || Sbjct 1297446 GCGCACGGCAGCGCGTCACACACAAACTCCCTTTCTATTTCCACCGCGTTCGCCACTATC 1297505 Query 33531 AATCTAACGGTTTCTTCACTCGG-TGGATGT--AATAAA-TGTTTAAACATCAAACATGC 33586 | || | || || ||| | | || | || | | ||| ||| || || || Sbjct 1297506 CCCTTCACTTTCTCCTCGCTCAGCTTCATCTTCAACAGACTGT----ACAGCAGGCACGC 1297561 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 |||||||||||||| ||||||||| | | |||||| ||||| || || || | || || Sbjct 1297562 GAAATCGCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCGG 1297621 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||| || || ||||| || ||||| || |||| ||| |||||| ||||| ||||| Sbjct 1297622 CATCAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAATATTCC 1297681 Query 33707 TTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--AT-AACCGGCGCTGTCATGTATCC 33762 || || ||| || ||||| | || || |||| | || | ||| || |||| |||| Sbjct 1297682 CTCCAC-GCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAGCCGTCA---ATCC 1297737 Query 33763 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 | | ||||||| ||||||||| | || || || | ||||| || || |||| Sbjct 1297738 AGCGGAGCGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAGA 1297797 Query 33823 GATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 | | ||| || || || | || || | |||| |||| | ||||| ||||| || Sbjct 1297798 GGTGGTTCTTCTC-CGACGAGTCCTTGATGTAAGCCTCGAGGAGGAGACTGTACATCTCG 1297856 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || ||||| || ||||| || || || |||||||| | ||||| | ||||| Sbjct 1297857 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCTCTGAGATCTGG 1297916 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 || || | || ||| | || | ||| || || || || || ||| || || Sbjct 1297917 ACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAG 1297976 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || || | || ||||| || |||| | ||| | | | || | ||| | | Sbjct 1297977 AAGGCGAGGACGTGTTTGATGAAATGCTGCTCGCCGGAGGAGAGGGTTACCCAGTGGCGG 1298036 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 | || | || | ||| ||||| || | ||||| || || || | || || || ||| Sbjct 1298037 AGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTGGGCTTTCTTGTAC 1298096 Query 34122 ATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 || | |||||| ||| |||| || || ||||| ||| Sbjct 1298097 ATCTCCCAGATTTCAGGATACTGAATCGGGAACATA 1298132 >seq20 Length=956477 Score = 149 bits (164), Expect = 8e-31 Identities = 380/576 (66%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||||||||| ||||| | || || ||||| || || || | Sbjct 870746 CACGCGAAATCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCAAC 870805 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| ||||||| ||| |||||| ||||| Sbjct 870806 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAT 870865 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33760 || ||||| || ||| || || || || | | ||| | ||| ||| | | | || Sbjct 870866 ATCCCTTCCAC-GCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCCGCCGTCGAT 870924 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| | ||||||| ||||||| | | || || || | || || || || || Sbjct 870925 CCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCGGAA 870984 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 ||| ||| || || | ||| || | || | |||| | || || ||||| || Sbjct 870985 GAGCCTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGCTGTACATCTC 871044 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 || || |||||||| || || ||||| || |||||||| | || || | ||||| Sbjct 871045 GGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTTCCGAGATCTG 871104 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 ||| || | || ||| | |||| ||||| || || || || ||| || || Sbjct 871105 CACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGCGAA 871164 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 34060 || |||| || ||||| || |||| || ||||| | | ||| | | ||| | Sbjct 871165 GAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTGGCG 871224 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 || || | || | ||| ||||| || | ||||| || || || || |||||||| || Sbjct 871225 GAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTA 871284 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 ||| | ||| || | | ||||| ||||| || || Sbjct 871285 CATCTCCCAAATTTGTGGGTATTGAATTGGAAACAT 871320 >seq848 Length=4381129 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| |||||||| | || ||||| || || || |||||| || ||| | |||| | Sbjct 3844255 GTTCCAGCATTAAAAAGAGTCGGAGATGCATGAGTGAACCATCGTTGAGACAACAGATGG 3844314 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 ||||| | ||| ||| ||| ||||| || || || || || | || | ||||||| Sbjct 3844315 TACGTTTTTATAACTGCGTCGATATCATCTTTGTGTATACCAACAGAAACTCTCATTAAC 3844374 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||||||||| |||||||||| || | | || | | ||| || |||| | Sbjct 3844375 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGGACCTTTAGGAGGTAAGACCTTTCGAGC 3844434 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| |||||||| | | |||| |||||||| || || || || Sbjct 3844435 GTTTTGAAACCAAAGAAATCGTATTCAAAGTCTCTGTCATATATTAT 3844481 >seq1991 Length=3980371 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | ||| ||||| || || || ||||| || ||| | |||| Sbjct 852655 GTTCCAGCATTGAAAAGGGTGGGAGATGCATGAGTGAACCACCGTTGAGACAAAAGATGA 852714 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 ||||| | |||| ||| || ||||| || || || || || | || | ||| ||| Sbjct 852715 TACGTTTTAATAACTGCATCGATATCATCTTTGTGGATACCGACAGAAACTCTCATCAAC 852774 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||| || || |||||||||| || | | || || | ||| || |||| | Sbjct 852775 ATGTGTTGTGGCCTTTCAACAACCTTCCCTTGGACCTTTAAAAGGTAAGACCTTTCGAGG 852834 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||||||||| | | ||| ||||||| ||||| || || Sbjct 852835 GTTTTAAAACCAAAGAAATCATATTCGAAGTCTCTGTCGTATATTAT 852881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800185543360