Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1991 86.0 6e-12 seq848 84.2 2e-11 >seq1991 Length=3980371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||| ||| ||| ||||| || || || | || ||||||||||| ||||||| || Sbjct 852642 TTGTGGCCTTGGTGTTCCAGCATTGAAAAGGGTGGGAGATGCATGAGTGAACCACCGTTG 852701 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||||| || ||| |||| || || |||| |||||| | ||| ||||| | ||| Sbjct 852702 AGACAAAAGATGATACGTTTTAATAACTGCATCGATATCATCTTTGTGGATACCGACAGA 852761 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || ||||| | ||| |||||||| ||||| Sbjct 852762 AACTCTCATCAACATGTGTTGTGGCCTTTC 852791 >seq848 Length=4381129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 38382 TATAAAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGAT 38439 ||||| |||| | |||| ||| ||| ||| ||||| || ||||| | || |||||| Sbjct 3844223 TATAATACAAGAA-ACATACTTGTGGCCTTGGTGTTCCAGCATTAAAAAGAGTCGGAGAT 3844281 Query 38440 GCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCA 38499 ||||| |||||||| || ||||| || || |||| ||| || | || |||||| Sbjct 3844282 GCATGAGTGAACCATCGTTGAGACAACAGATGGTACGTTTTTATAACTGCGTCGATATCA 3844341 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | ||| ||||| | ||| || ||||||| ||| || || || ||||| Sbjct 3844342 TCTTTGTGTATACCAACAGAAACTCTCATTAACATGTGCTGAGGCCTTTC 3844391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511845289280