Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq504 143 4e-29 seq20 134 2e-26 seq848 104 3e-17 seq1991 86.0 8e-12 >seq504 Length=2204878 Score = 143 bits (158), Expect = 4e-29 Identities = 567/877 (65%), Gaps = 20/877 (2%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || || ||||| || || | || || || || || |||||||||| || || Sbjct 1297266 TTCTGATATTCTCCAACCCTCTTCTCAAAGAAGTTTGTTTTACCTTGCAAGCTAATCAGC 1297325 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| |||||||| ||||| || || || | |||||||| || | | Sbjct 1297326 TCCATCCAATCAAATGGATTCTGCACATTGTACATCTTCCCACATCCCAATGCATTCAGC 1297385 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AAG 36045 ||||||||||| |||||||| || || |||||||||| | ||||| || | || Sbjct 1297386 AATCTATCTGCTACAAATTCAATGTACTGGCTCATCATTTCTCCGTTCATCCCCACCAAC 1297445 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || || || || || | ||| || ||| || ||||||| | | || Sbjct 1297446 GCGCAC-GGCAGCGCGTCACACACAAACTCCCTTTCTATTTCCACCGCGTTCGCCACTAT 1297504 Query 36106 AGATATTACTGTTTCTTCACTCGG-TGGATA--CAATAAA-TGTTTAAACATCAAACATG 36161 | ||| | || || ||| | | || ||| | | ||| ||| || || | Sbjct 1297505 CCCCTTCACTTTCTCCTCGCTCAGCTTCATCTTCAACAGACTGT----ACAGCAGGCACG 1297560 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 ||||||||||||| | ||||||||| | | |||||| ||||| || || || | || | Sbjct 1297561 CGAAATCGCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCG 1297620 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 36280 |||| || || ||||| || ||||| || |||| |||| || ||| || ||||| ||| Sbjct 1297621 GCATCAGCCCCCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGCTTCCGGAGAAGAATATT 1297679 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--AT-AACCGGCACTGTCATGTATC 36337 || || || || ||||| | || || |||| | || | ||| | |||| ||| Sbjct 1297680 CCCTCCACGCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAGCCGTCA---ATC 1297736 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || | ||||||| ||||||||| | || || || | || || || || ||| Sbjct 1297737 CAGCGGAGCGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAG 1297796 Query 36398 AGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 || | ||| || || || | || || | || | || | | ||||| ||||| || Sbjct 1297797 AGGTGGTTCTTCTC-CGACGAGTCCTTGATGTAAGCCTCGAGGAGGAGACTGTACATCTC 1297855 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || || ||||| || ||||| ||||| || |||||||| | ||||| | ||||| Sbjct 1297856 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCTCTGAGATCTG 1297915 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || || | || ||| | || | ||| || || || ||||| ||| || || Sbjct 1297916 GACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAA 1297975 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 || || | || ||||| || |||| | ||| | | || | ||| | Sbjct 1297976 GAAGGCGAGGACGTGTTTGATGAAATGCTGCTCGCCGGAGGAGAGGGTTACCCAGTGGCG 1298035 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 || || | || | ||| ||||| || | ||||| || || || | || || || || Sbjct 1298036 GAGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTGGGCTTTCTTGTA 1298095 Query 36697 CATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 ||| | |||||| ||| |||| ||||| || || ||| Sbjct 1298096 CATCTCCCAGATTTCAGGATACTGAATCGGGAACATA 1298132 >seq20 Length=956477 Score = 134 bits (148), Expect = 2e-26 Identities = 377/576 (65%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||| ||||| ||||| | || || ||||| || || || | Sbjct 870746 CACGCGAAATCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCAAC 870805 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| || || ||||| || ||||| ||||||| |||| | | | || || ||||| Sbjct 870806 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 870864 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || ||||| || || || || || | | ||| | ||| | | | | | || Sbjct 870865 TATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCCGCCGTCGAT 870924 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| | ||||||| ||||||| | | || || || | ||||| || || || Sbjct 870925 CCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCGGAA 870984 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 ||| ||| || || | ||| || | || | || | | || || ||||| || Sbjct 870985 GAGCCTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGCTGTACATCTC 871044 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || || |||||||| || || || || || |||||||| | || || | ||||| Sbjct 871045 GGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTTCCGAGATCTG 871104 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || || | || ||| | |||| ||||| || || ||||| ||| || || Sbjct 871105 CACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGCGAA 871164 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 || |||| || ||||| || |||| || |||| | | ||| | | ||| | Sbjct 871165 GAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTGGCG 871224 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 || || | || | ||| ||||| || | ||||| || || || || |||||||| || Sbjct 871225 GAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTA 871284 Query 36697 CATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 ||| | ||| || | | |||||||||||||| || Sbjct 871285 CATCTCCCAAATTTGTGGGTATTGAATTGGAAACAT 871320 >seq848 Length=4381129 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| |||||||| | || ||||| || || || |||||| || ||| | |||| | Sbjct 3844255 GTTCCAGCATTAAAAAGAGTCGGAGATGCATGAGTGAACCATCGTTGAGACAACAGATGG 3844314 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| | ||| ||| ||| ||||| || || || || || | || | ||||||| Sbjct 3844315 TACGTTTTTATAACTGCGTCGATATCATCTTTGTGTATACCAACAGAAACTCTCATTAAC 3844374 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||||||||| |||||||| | ||| | | || | | ||| || |||| | Sbjct 3844375 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGGACCTTTAGGAGGTAAGACCTTTCGAGC 3844434 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| |||||||| | | |||| |||||||| || || || || Sbjct 3844435 GTTTTGAAACCAAAGAAATCGTATTCAAAGTCTCTGTCATATATTAT 3844481 >seq1991 Length=3980371 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | ||| ||||| || || || ||||| || ||| | |||| Sbjct 852655 GTTCCAGCATTGAAAAGGGTGGGAGATGCATGAGTGAACCACCGTTGAGACAAAAGATGA 852714 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| | |||| ||| || ||||| || || || || || | || | ||| ||| Sbjct 852715 TACGTTTTAATAACTGCATCGATATCATCTTTGTGGATACCGACAGAAACTCTCATCAAC 852774 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||| || || |||||||| | ||| | | || || | ||| || |||| | Sbjct 852775 ATGTGTTGTGGCCTTTCAACAACCTTCCCTTGGACCTTTAAAAGGTAAGACCTTTCGAGG 852834 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||||||||||||| | | ||| ||||||| ||||| || || Sbjct 852835 GTTTTAAAACCAAAGAAATCATATTCGAAGTCTCTGTCGTATATTAT 852881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658154601522080