Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq504 95.1 9e-15 seq20 89.7 4e-13 >seq504 Length=2204878 Score = 95.1 bits (104), Expect = 9e-15 Identities = 240/365 (66%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 22795 GCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTG 22854 ||||| |||||||||||||| || ||| ||||| |||||| | || || |||||||| Sbjct 1297654 GCCATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCGGGGTTGACTTTCTCGAACGAGTTA 1297595 Query 22855 ATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCA 22914 ||| || ||||| ||| | ||||| || || || || |||||| || | || Sbjct 1297594 ATTTCTCGCGACGAGGGTTTGCACTGCGATTTCGCGTGCCTGCTGTACAGTCTGTTGAAG 1297535 Query 22915 AACAAACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACG 22974 | || | | | |||| | | | || | | | || || || || || | | Sbjct 1297534 ATGAAGCTGAGCGAGGAGAAAGTGAAGGGGATAGTGGCGAACGCGGTGGAAATAGAAAGG 1297475 Query 22975 GCTTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGA 23034 | || | || || || | | | | || ||||| | || | ||||| Sbjct 1297474 GAGTTTGTGTGTGACGCGCTGCCGTGCGCGTTGGTGGGGATGAACGGAGAAATGATGAGC 1297415 Query 23035 CTGTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTAT 23094 | |||||| | ||||| |||||| | |||| |||| |||| | || |||||||| Sbjct 1297414 CAGTACATTGAATTTGTAGCAGATAGATTGCTGAATGCATTGGGATGTGGGAAGATGTAC 1297355 Query 23095 AACGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTC 23154 || || ||||||||||||| ||||| |||||| | ||||||||||||||||| Sbjct 1297354 AATGTGCAGAATCCATTTGATTGGATGGAGCTGATTAGCTTGCAAGGTAAAACAAACTTC 1297295 Query 23155 TTTGA 23159 ||||| Sbjct 1297294 TTTGA 1297290 >seq20 Length=956477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 22795 GCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTG 22854 |||||||||||||||||||| || || ||||| |||||| | || || ||||||||| Sbjct 870843 GCCATATTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGTTGACTTTCTCGAACGAGTTG 870784 Query 22855 ATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCT 22898 || |||||||||||||| ||||| || || || || |||| Sbjct 870783 ATATCGCGTGACGAAGGTCTGCACTGCGATTTCGCGTGCCTGCT 870740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356223996387436