Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2167 125 7e-24 seq2135 116 4e-21 seq310 116 4e-21 seq582 109 5e-19 seq1098 86.0 6e-12 >seq2167 Length=1051226 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || |||| || || |||| || ||||| |||||||||||||||||| Sbjct 203760 CCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAATCGGCA 203819 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||||||||| ||||| ||| ||||||| | |||||| || ||||| Sbjct 203820 AGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGG 203879 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| || | | || | |||||| | || || Sbjct 203880 ATACCTTCTTTGTCCTGGATTTTCGCCTTGACATTGTCGATTGTGTCTGAACTTTCAACT 203939 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| || |||||||| |||||||| Sbjct 203940 TCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCAT 203986 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | ||||||| || | || | || ||||| ||||| ||||| || || Sbjct 210946 GCCGCCCCTCAAACGCAGCACAAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCTGC 211005 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| || |||||| || ||||| |||||| |||||| | ||||| || ||||| Sbjct 211006 AAGTGTTCTACCGTCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCCGGAGG 211065 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||||||| ||| | | || | |||||| | || || Sbjct 211066 GATCCCTTCTTTGTCCTGGATTTTTGCTTTAACATTATCAATTGTGTCTGAACTTTCAAC 211125 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||| ||||||||||| || ||||| || ||||| Sbjct 211126 CTCCAAAGTAATCGTCTTTCCGGTCAACGTCTTAACGAAAATCTGCAT 211173 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || || ||||||||| | |||| ||||||||||||||| ||| Sbjct 203562 GTGGACTCCTTCTGGATATTATAATCGGCAAGCGTGCGTCCGTCTTCGAGCTGTTTCCCA 203621 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| || | |||||| || || || || ||||| || || ||| | |||| ||| Sbjct 203622 GCAAAGATGAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTATC-TTGAATCTTTGCTTT 203680 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||| |||| ||||||||| | || | ||| ||||| ||||| || Sbjct 203681 CACATTGTCGATTGTATCGGAACTCTCCACCTCCAAAGTGATCGTTTTGCCCGTCAAAGT 203740 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 203741 CTTGACGAAGATTTGCAT 203758 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||| ||||| || ||||| || || || ||||||||||| ||||| Sbjct 204018 GTCGATTCTTTCTGAATATTGTAATCAGCCAGCGTTCTGCCATCTTCGAGCTGCTTACCT 204077 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||| || ||||| |||||||||||||| |||||| ||| Sbjct 204078 GCAAAGATTAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTA 204137 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| | || || || | || | |||||| || ||||| || Sbjct 204138 ACATTGTCGATTGTGTCTGAACTTTCGACTTCCAAAGTAATCGTCTTTCCAGTCAATGTC 204197 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 204198 TTGACGAAGATTTGCAT 204214 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || || ||||||||| | |||| |||||||||||| || ||| Sbjct 210521 GTTGACTCCTTCTGGATATTATAATCGGCAAGCGTGCGTCCGTCTTCGAGCTGCTTCCCA 210580 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| || | |||||| || || || || ||||| || || ||| | |||| ||| Sbjct 210581 GCAAAGATGAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTATC-TTGAATCTTTGCTTT 210639 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||| || | ||||||||| | || | ||| ||||| ||||| || Sbjct 210640 CACATTGTCGATTGTATCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCCGTCAAAGT 210699 Query 139747 TTTTACGAATATTTGCAT 139764 |||||||| |||||||| Sbjct 210700 CTTTACGAAGATTTGCAT 210717 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || || || ||||| | || | | |||||||| ||||| ||| Sbjct 211205 GTAGACTCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCATCTTCGAGTTGTTTCCCA 211264 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||||||| ||||| || ||||||||||| ||| |||| | ||| Sbjct 211265 GCAAAGATCAATCTTTGCTGATCCGGAGGAATCCCTTCTTTGTC-CTGAATTTTCGCTTT 211323 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||||| | || || || | || | |||||| || ||||| || Sbjct 211324 AACATTATCGATAGTGTCTGAACTTTCAACTTCCAAAGTAATCGTCTTTCCAGTCAATGT 211383 Query 139747 TTTTACGAATATTTGCAT 139764 || |||||||| ||||| Sbjct 211384 CTTGACGAATATCTGCAT 211401 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || || |||| || ||||| ||||| |||||||||||| | || || Sbjct 210728 AACCGCAGTACCAAATGAAGAGTCGACTCCTTTTGGATGTTATAATCGGCAAGCGTCCTA 210787 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| ||||| ||||| ||| |||||| | ||||| ||||| || || |||||| Sbjct 210788 CCATCTTCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCT 210847 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| |||||| || | | || | ||||| | ||| || || | || Sbjct 210848 TTGTCTTGGATTTTCGCCTTAACATTGTCGATAGTGTCCGAACTCTCAACTTCTAAAGTG 210907 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| |||||||| || || || || |||||||| Sbjct 210908 ATTGTCTTTCCGGTCAATGTCTTGACAAAGATTTGCAT 210945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || ||||| || | || | || || || ||||||||||| ||||| || ||| || Sbjct 204225 AACCGCAACACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCCGCCAATGTTCTA 204284 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| || || || || ||| ||||||| | |||||| || ||||| || |||||| Sbjct 204285 CCATCTTCAAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGGATCCCTTCT 204344 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| |||||| ||| | | || | |||||| | || ||||| | || Sbjct 204345 TTGTCTTGGATTTTGGCTTTAACGTTGTCGATTGTGTCTGAACTTTCGACCTCCAAAGTG 204404 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| || || || || || ||||| Sbjct 204405 ATTGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 204442 >seq2135 Length=1067647 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | |||||||| ||||||||||| |||||| Sbjct 901819 CCCCCTCTGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCGGCA 901760 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | ||||||||| ||||| |||||| |||||| | |||||| || ||||| Sbjct 901759 AGAGTGCGCCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAACCTTTGCTGGTCCGGAGGG 901700 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | |||||| Sbjct 901699 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTTTCCACC 901640 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| ||||||| ||||| || || || ||||| Sbjct 901639 TCGAGGGTGATGGTCTTTCCGGTCAGGGTTTTCACAAAGATCTGCAT 901593 >seq310 Length=2395884 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| || |||||||| | |||| ||| ||||| ||||| || |||||||| Sbjct 1997430 CCGCCTCTCAACCGCAAAACCAGATGAAGCGTCGACTCCTTTTGGATATTATAATCTGCA 1997371 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| ||| ||||||||||| ||||| ||| |||||| ||||||||| || ||||| Sbjct 1997370 AGTGTCCTCCCATCTTCGAGCTGCTTACCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 1997311 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | || | | || | ||||| | || || Sbjct 1997310 ATACCTTCCTTGTC-TTGAATTTTCGCCTTCACATTGTCGATCGTGTCTGAACTTTCAAC 1997252 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || |||||||| || || || || || ||||| Sbjct 1997251 CTCCAGTGTAATGGTTTTTCCGGTCAAAGTCTTGACAAAAATCTGCAT 1997204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||||||||| | |||| || ||||| || || || || ||||| || || ||| Sbjct 1997193 AAACGCAAAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCCAAGGTCCTC 1997134 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 |||||||| ||||| || || |||||| | ||||| || ||||| || || || Sbjct 1997133 CCATCTTCGAGTTGTTTGCCTGCGAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCC 1997074 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| |||||| || | | || | ||||| | | || ||||| | || Sbjct 1997073 TTGTC-TTGAATTTTTGCCTTCACGTTATCGATGGTGTCTGAGCTTTCAACCTCCAATGT 1997015 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || |||||||| || || ||||| || ||||| Sbjct 1997014 AATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 1996976 >seq582 Length=2128859 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| ||||| ||||| || ||| Sbjct 290931 GCCACCACGCAGACGGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGC 290872 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || ||||||||||| || ||| |||| || | |||||| || || || Sbjct 290871 GAGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGCCTTTGCTGGTCCGGGGG 290812 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || |||||| || | | || | |||||||| | ||||| Sbjct 290811 AATTCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTTTCCAC 290752 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 290751 CTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 290704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 |||||||| || || ||||||||||| || || | || | || |||||||| || || Sbjct 298956 GTAGACTCCTTCTGGATGTTATAATCTGCCAAAGTACGTCCA-TCCTCGAGCTGCTTTCC 298898 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||| | ||||||||| || || |||||||| ||||| ||| || || Sbjct 298897 AGCAAAGATCAATCTTTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 298838 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | |||||| || | ||| | ||||| || || | || Sbjct 298837 GACATTGTCAATGGTGTCGGAGCTCTCCACTTCGAGGGTGATGGTCTTCCCAGTAAGGGT 298778 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 298777 CTTGACGAAAATCTGCATA 298759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | |||||||| || || ||||| || ||| | Sbjct 291842 CCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCC 291783 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||| || ||||| ||||||| | ||||| || || || Sbjct 291782 AAAGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 291723 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 291722 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCGACC 291663 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| ||||| | || || ||||| || |||||| Sbjct 291662 TCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCATA 291615 >seq1098 Length=1756062 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || || |||||||| || || ||||| || || || || Sbjct 778414 CAAAACGAGGTGAAGGGTCGATTCTTTTTGGATATTGTAATCTGCCAAAGTTCTGCCATC 778355 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||||||||||||| | ||||| | ||||| || |||||||| ||||||||||| Sbjct 778354 TTCTAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGGTATTCCTTCTTTGTC 778295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496050283830400