Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq504 161 1e-34 seq20 143 4e-29 seq848 107 3e-18 seq1991 95.1 2e-14 >seq504 Length=2204878 Score = 161 bits (178), Expect = 1e-34 Identities = 394/589 (67%), Gaps = 10/589 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || || |||||||||||||||| ||||||||| | | ||||| ||||| || | Sbjct 1297549 ACAGCAGGCACGCGAAATCGCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGA 1297608 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || | || ||||| || || ||||| || ||||| || |||| |||| || || Sbjct 1297609 AAGTCAACCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGCTTCCG 1297667 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| ||||| || || ||| ||||| |||| || |||| | || | | || | Sbjct 1297668 GAGAAGAATATTCCCTCCACGCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAG 1297727 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | |||| ||||| | ||||||| ||||||||| | || || || | ||||| Sbjct 1297728 CCGTCA---ATCCAGCGGAGCGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCG 1297784 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAG 50246 || || ||||| | ||| || || || | || || | |||| |||| | || Sbjct 1297785 ATTGCGCGGAAGAGGTGGTTCTTCTC-CGACGAGTCCTTGATGTAAGCCTCGAGGAGGAG 1297843 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 ||| ||||| || || || ||||| || ||||| || || || |||||||| | || Sbjct 1297844 ACTGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGC 1297903 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366 ||| | ||||| || || | || ||| | || | ||| || || || ||||| Sbjct 1297904 CTCTGAGATCTGGACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCCGTC 1297963 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT 50426 ||| || || || || | || ||||| || ||||| | ||| || | || | Sbjct 1297964 GGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAATGCTGCTCGCCGGAGGAGAGGGT 1298023 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 ||| | || || | || | ||| ||||| || | ||||| || || || | Sbjct 1298024 TACCCAGTGGCGGAGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTG 1298083 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 || || || ||||| | |||||| ||| |||| || || ||||| ||| Sbjct 1298084 GGCTTTCTTGTACATCTCCCAGATTTCAGGATACTGAATCGGGAACATA 1298132 >seq20 Length=956477 Score = 143 bits (158), Expect = 4e-29 Identities = 379/576 (66%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||||||||| ||||| | || | ||||| || || || | Sbjct 870746 CACGCGAAATCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCAAC 870805 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| ||||||| |||| || || || ||||| Sbjct 870806 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 870864 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 || ||||| || ||| || || | | | ||| | ||| ||| | | | || Sbjct 870865 TATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCCGCCGTCGAT 870924 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| | ||||||| ||||||| | | || || || | || || || || || Sbjct 870925 CCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCGGAA 870984 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 ||| ||| || || | ||| || | || | |||| | || || ||||| || Sbjct 870985 GAGCCTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGCTGTACATCTC 871044 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || |||||||| || || ||||| || |||||||| | || || | ||||| Sbjct 871045 GGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTTCCGAGATCTG 871104 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 ||| || | || ||| | |||| ||||| || || ||||| ||| || || Sbjct 871105 CACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGCGAA 871164 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 || |||| || ||||| || ||||| || |||| || | ||| | | ||| | Sbjct 871165 GAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTGGCG 871224 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 || || | || | ||| ||||| || | ||||| || || || || |||||||| || Sbjct 871225 GAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTA 871284 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||| | ||| || | | ||||| ||||| || || Sbjct 871285 CATCTCCCAAATTTGTGGGTATTGAATTGGAAACAT 871320 >seq848 Length=4381129 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| |||||||| | || ||||| || || || |||||| || ||||| |||| | Sbjct 3844255 GTTCCAGCATTAAAAAGAGTCGGAGATGCATGAGTGAACCATCGTTGAGACAACAGATGG 3844314 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| | ||| ||| || ||||| || || || || || | || | ||||||| Sbjct 3844315 TACGTTTTTATAACTGCGTCGATATCATCTTTGTGTATACCAACAGAAACTCTCATTAAC 3844374 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||||||||| |||||||| | ||| | | || | | |||||| |||| | Sbjct 3844375 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGGACCTTTAGGAGGTAAGACCTTTCGAGC 3844434 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| |||||||| | | |||| |||||||| || || || || Sbjct 3844435 GTTTTGAAACCAAAGAAATCGTATTCAAAGTCTCTGTCATATATTAT 3844481 >seq1991 Length=3980371 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| ||||| || || || ||||| || ||||| |||| Sbjct 852655 GTTCCAGCATTGAAAAGGGTGGGAGATGCATGAGTGAACCACCGTTGAGACAAAAGATGA 852714 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| | |||| ||| || ||||| || || || || || | || | ||| ||| Sbjct 852715 TACGTTTTAATAACTGCATCGATATCATCTTTGTGGATACCGACAGAAACTCTCATCAAC 852774 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| || || |||||||| | ||| | | || || | |||||| |||| | Sbjct 852775 ATGTGTTGTGGCCTTTCAACAACCTTCCCTTGGACCTTTAAAAGGTAAGACCTTTCGAGG 852834 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||||||||| | | ||| ||||||| ||||| || || Sbjct 852835 GTTTTAAAACCAAAGAAATCATATTCGAAGTCTCTGTCGTATATTAT 852881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718248939867680