Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq504 145 1e-29 seq20 134 2e-26 seq1991 86.0 8e-12 >seq504 Length=2204878 Score = 145 bits (160), Expect = 1e-29 Identities = 394/591 (67%), Gaps = 14/591 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || |||||||||||||||| |||||| || | | |||||| ||||| || | Sbjct 1297549 ACAGCAGGCACGCGAAATCGCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGA 1297608 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || | || ||||| || || ||||| || ||||| || || | |||| || ||| Sbjct 1297609 AAGTCAACCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGAT-GGCGCAGAAGCTTCCG 1297667 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--AT-AACCGGCA 42232 || ||||| ||||| || || || ||||| | || || |||| | || | ||| Sbjct 1297668 GAGAAGAATATTCCCTCCACGCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAG 1297727 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | |||| ||||| | ||||||| ||||||||| | || || || | ||||| Sbjct 1297728 CCGTCA---ATCCAGCGGAGCGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCG 1297784 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCGATCAAAAG 42351 || || ||||| | ||| || || || | || || | || | |||| | || Sbjct 1297785 ATTGCGCGGAAGAGGTGGTTCTTCTC-CGACGAGTCCTTGATGTAAGCCTCGAGGAGGAG 1297843 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 ||| ||||| || || || ||||| || ||||| || || || |||||||| | ||| Sbjct 1297844 ACTGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGC 1297903 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 ||| | | ||| || || | || ||| | || | ||| || || || ||||| Sbjct 1297904 CTCTGAGATCTGGACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCCGTC 1297963 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA--T 42529 ||| || || || || | || ||||| || |||| | ||| |||| | | Sbjct 1297964 GGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAATGCTGCTCG-CCGGAGGAGAGGG 1298022 Query 42530 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589 ||| ||| | || || | || | ||| ||||| || | ||||| || || ||| Sbjct 1298023 TTA-CCCAGTGGCGGAGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCT 1298081 Query 42590 TCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | || || || ||||| | |||||| ||| |||| ||||| ||||| ||| Sbjct 1298082 TGGGCTTTCTTGTACATCTCCCAGATTTCAGGATACTGAATCGGGAACATA 1298132 >seq20 Length=956477 Score = 134 bits (148), Expect = 2e-26 Identities = 377/576 (65%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||||||||| || || | || || ||||| || || || | Sbjct 870746 CACGCGAAATCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCAAC 870805 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || ||||| || ||||| ||||| | |||| | | | || || ||||| Sbjct 870806 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 870864 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || ||||| || || || || || | | ||| | ||| | | | | | || Sbjct 870865 TATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCCGCCGTCGAT 870924 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | ||||||| ||||||| | | || || || | || || || || || Sbjct 870925 CCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCGGAA 870984 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 ||| ||| || || | ||| || | || | |||| | || || ||||| || Sbjct 870985 GAGCCTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGCTGTACATCTC 871044 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || |||||||| || || ||||| || |||||||| | ||| || | | ||| Sbjct 871045 GGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTTCCGAGATCTG 871104 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || | || ||| | |||| ||||| || || ||||| ||| || || Sbjct 871105 CACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGCGAA 871164 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || |||| || ||||| || |||| || ||||| | | || | | ||| | Sbjct 871165 GAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTGGCG 871224 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 || || | || | ||| ||||| || | ||||| || || ||||| |||||||| || Sbjct 871225 GAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTA 871284 Query 42604 CATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 ||| | ||| || | | ||||||||||| || || Sbjct 871285 CATCTCCCAAATTTGTGGGTATTGAATTGGAAACAT 871320 >seq1991 Length=3980371 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | ||| ||||| || || || ||||| || ||||| |||| Sbjct 852655 GTTCCAGCATTGAAAAGGGTGGGAGATGCATGAGTGAACCACCGTTGAGACAAAAGATGA 852714 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 ||||| | |||| ||| || ||||| || || || || || | || | ||| ||| Sbjct 852715 TACGTTTTAATAACTGCATCGATATCATCTTTGTGGATACCGACAGAAACTCTCATCAAC 852774 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || || || |||||||| | ||| | | || || | ||| || |||| | Sbjct 852775 ATGTGTTGTGGCCTTTCAACAACCTTCCCTTGGACCTTTAAAAGGTAAGACCTTTCGAGG 852834 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||||||| | | ||| ||||||| ||||| || || Sbjct 852835 GTTTTAAAACCAAAGAAATCATATTCGAAGTCTCTGTCGTATATTAT 852881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671120643001120