Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2167 125 7e-24 seq2135 104 2e-17 seq310 96.9 4e-15 seq1098 86.0 6e-12 >seq2167 Length=1051226 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || |||| || ||||||| || || || ||||| ||||| |||||| Sbjct 203760 CCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAATCGGCA 203819 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||||| || ||||| ||| ||||||| | |||||| || ||||| Sbjct 203820 AGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGG 203879 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| || | | || | ||||| | ||| ||| Sbjct 203880 ATACCTTCTTTGTCCTGGATTTTCGCCTTGACATTGTCGATTGTGTCTGAACTTTCAACT 203939 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || |||||||| |||||||| |||||||| Sbjct 203940 TCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCAT 203986 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 |||||| ||||| || || |||||||| | || | | |||||||||||||| || Sbjct 211204 TGTAGACTCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCATCTTCGAGTTGTTTCCC 211263 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||||| | ||||||||| ||||| || ||||||||||| |||||| ||| Sbjct 211264 AGCAAAGATCAATCTTTGCTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTTCGCTTT 211323 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||||| | ||| ||||| | ||| | |||||| || |||||||| Sbjct 211324 AACATTATCGATAGTGTCTGAACTTTCAACTTCCAAAGTAATCGTCTTTCCAGTCAATGT 211383 Query 143167 TTTTACGAATATTTGCAT 143184 || |||||||| ||||| Sbjct 211384 CTTGACGAATATCTGCAT 211401 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || || |||||||| || || || |||||||| || ||||| Sbjct 204018 GTCGATTCTTTCTGAATATTGTAATCAGCCAGCGTTCTGCCATCTTCGAGCTGCTTACCT 204077 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | |||||| || ||||| |||||||||||||| ||||| ||| Sbjct 204078 GCAAAGATTAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTA 204137 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | ||| ||||| | ||| | |||||| || |||||||| Sbjct 204138 ACATTGTCGATTGTGTCTGAACTTTCGACTTCCAAAGTAATCGTCTTTCCAGTCAATGTC 204197 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 204198 TTGACGAAGATTTGCAT 204214 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||||| || | ||| | || || || ||||| |||||||| || | ||| || Sbjct 210956 AAACGCAGCACAAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCTGCAAGTGTTCTA 211015 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 |||||| |||||||| |||||| |||||| | ||||| || ||||| || |||||| Sbjct 211016 CCGTCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCCGGAGGGATCCCTTCT 211075 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| |||||| ||| | | || | ||||| | ||| || || | ||| Sbjct 211076 TTGTCCTGGATTTTTGCTTTAACATTATCAATTGTGTCTGAACTTTCAACCTCCAAAGTA 211135 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||||| |||||||| || || ||||| || ||||| Sbjct 211136 ATCGTCTTTCCGGTCAACGTCTTAACGAAAATCTGCAT 211173 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || ||||| || | ||| | || ||||| ||||| ||||||||||| || ||| || Sbjct 204225 AACCGCAACACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCCGCCAATGTTCTA 204284 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||||| ||||| || || ||| ||||||| | |||||| || ||||| || |||||| Sbjct 204285 CCATCTTCAAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGGATCCCTTCT 204344 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||||| ||| | | || | ||||| | ||| || || | ||| Sbjct 204345 TTGTCTTGGATTTTGGCTTTAACGTTGTCGATTGTGTCTGAACTTTCGACCTCCAAAGTG 204404 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| || || || || || ||||| Sbjct 204405 ATTGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 204442 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 |||||||||||| || || |||||||| | || | | ||||||||||||||| || Sbjct 211432 TGTAGATTCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCGTCTTCGAGTTGTTTCCC 211491 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||| || | |||||||| ||||| || ||||| || || |||||| || Sbjct 211492 AGCAAAGATTAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTTTAGACTT 211551 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || || || || | | || || || | ||| | |||||| || || | || Sbjct 211552 GACGTTGTCTACGGTATCTGAGCTCTCGACCTCGAGAGTGATCGTCTTACCAGTAAGAGT 211611 Query 143167 TTTTACGAATATTTGCAT 143184 |||||| ||||| ||||| Sbjct 211612 TTTTACAAATATCTGCAT 211629 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTTCGAGTTGTTTA 143044 |||||||||||| || || |||||||| | || |||| ||||||||||| || Sbjct 204701 TGTAGATTCTTTCTGGATATTGTAATCAGCGAGGGT--TCGACCATCTTCGAGTTGCTTG 204758 Query 143045 CCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGT 143104 |||||| |||||| | |||||| || ||||| |||||||| ||||| || ||| | Sbjct 204759 CCAGCAAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCT 204818 Query 143105 TTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAAT 143164 || | | || | ||| || | | || ||||||| ||| | ||||| ||||| | Sbjct 204819 TTGACATTATCGATCGTATCTGAGCTCTCGACTTCAAGAGTGATGGTCTTCCCGGTAAGA 204878 Query 143165 GTTTTTACGAATATTTGCAT 143184 ||||| || || || ||||| Sbjct 204879 GTTTTCACAAAAATCTGCAT 204898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || ||||||| || || || ||||| ||||| |||||| Sbjct 210719 CCTCCCCTCAACCGCAGTACCAAATGAAGAGTCGACTCCTTTTGGATGTTATAATCGGCA 210778 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || || ||||| ||| |||||| | ||||| ||||| || Sbjct 210779 AGCGTCCTACCATCTTCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCGGGTGGG 210838 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| || | | || | ||||||| || ||| Sbjct 210839 ATTCCTTCTTTGTCTTGGATTTTCGCCTTAACATTGTCGATAGTGTCCGAACTCTCAACT 210898 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| ||||||||||| || || || |||||||| Sbjct 210899 TCTAAAGTGATTGTCTTTCCGGTCAATGTCTTGACAAAGATTTGCAT 210945 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 ||||||||||||||| || |||||||| | || | ||||||||||||||||| Sbjct 204929 TGTAGATTCTTTTTGGATATTGTAATCTGCGAGGGTTCGGCCATCTTCGAGTTGTTTACC 204988 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||| | | ||||| || || || || ||||| || || |||||| ||| Sbjct 204989 AGCAAAGATTAACCTCTGCTGGTCCGGGGGAATTCCTTCCTTATCTTGAATTTTAGCTTT 205048 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||| || | || || || | ||| | |||||||||||| | || Sbjct 205049 GACGTTGTCGATCGTATCTGAACTCTCGACCTCGAGAGTGATCGTCTTGCCGGTAAGAGT 205108 Query 143167 TTTTACGAATATTTGCAT 143184 ||||| || || ||||| Sbjct 205109 CTTTACAAAGATCTGCAT 205126 >seq2135 Length=1067647 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || ||||| |||||||||||| | |||| | ||||||||||||||| ||| Sbjct 901789 GTAGACTCCTTTTGAATGTTGTAATCGGCAAGAGTGCGCCCGTCTTCGAGTTGTTTGCCA 901730 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||| || ||||| || ||||| ||||| || || || Sbjct 901729 GCAAAGATCAACCTTTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTC 901670 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| | ||| || || | || | ||||| ||||||| ||| Sbjct 901669 ACGTTGTCGATGGTGTCCGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGGTCAGGGTT 901610 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 901609 TTCACAAAGATCTGCAT 901593 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || || || ||||||||||| | |||| | ||||||||||||||| ||| Sbjct 902017 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCGAGTTGTTTGCCA 901958 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | ||||| || || || ||||| || ||||| || || ||| Sbjct 901957 GCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTA 901898 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | || ||||||| || | ||||| || || | || Sbjct 901897 ACGTTGTCAATCGTGTCAGAACTCTCGACTTCAAGGGTGATAGTCTTCCCAGTGAGGGTC 901838 Query 143168 TTTACGAATATTTGCATA 143185 || || ||||| |||||| Sbjct 901837 TTGACAAATATCTGCATA 901820 >seq310 Length=2395884 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||||||||| | ||||| || || || || || || |||||||| || || ||| Sbjct 1997193 AAACGCAAAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCCAAGGTCCTC 1997134 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 |||||||||||||| || || |||||| | ||||| || ||||| || || || Sbjct 1997133 CCATCTTCGAGTTGTTTGCCTGCGAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCC 1997074 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||||||| || | | || | ||||| | | ||| || || | || Sbjct 1997073 TTGTCTTGAATTTTTGCCTTCACGTTATCGATGGTGTCTGAGCTTTCAACCTCCAATGTA 1997014 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||||||| || || ||||| || ||||| Sbjct 1997013 ATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 1996976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | ||||||||||| | ||||| || || || || || || |||||||| Sbjct 1996975 GCCTCCCCTCAAACGCAAAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCTGC 1996916 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || ||| |||||||||||||| || ||| | |||| | ||||| || ||||| Sbjct 1996915 CAAGGTCCTCCCATCTTCGAGTTGTTTGCCTGCAAATATCAATCTCTGCTGGTCTGGAGG 1996856 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| |||||| || | | || | ||||| | ||| || Sbjct 1996855 AATTCCCTCCTTGTCTTGAATTTTCGCCTTGACGTTATCAATGGTGTCTGAACTTTCAAC 1996796 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || |||||||| || || ||||| || ||||| Sbjct 1996795 CTCCAATGTAATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 1996748 >seq1098 Length=1756062 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | |||| || ||||||||||| || |||||||| || || || || Sbjct 778414 CAAAACGAGGTGAAGGGTCGATTCTTTTTGGATATTGTAATCTGCCAAAGTTCTGCCATC 778355 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | |||||||||||| | ||||| | ||||| || |||||||| ||||||||||| Sbjct 778354 TTCTAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGGTATTCCTTCTTTGTC 778295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507000381051840