Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2135 104 2e-17 seq2167 95.1 1e-14 seq582 91.5 1e-13 seq310 86.0 5e-12 seq149 82.4 6e-11 >seq2135 Length=1067647 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||| | ||||| ||| | || |||||||||||||||||||| |||||| Sbjct 902959 CCTCCCCTCAACCTCAGCACCAAGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGCC 902900 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||| || || ||| | || || |||||||| ||| || Sbjct 902899 AAAGTGCGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 902840 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || ||| || | | | | || ||| |||| Sbjct 902839 ATTCCTTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCAATCGTGTCGGAGCTCTCCACC 902780 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | ||| ||||||||||| ||||| Sbjct 902779 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCAT 902733 >seq2167 Length=1051226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||||| ||| | ||| | || || || || |||||||||||||| ||| Sbjct 203988 CCACCACGAAGCCTTAGCACAAGGTGGAGAGTCGATTCTTTCTGAATATTGTAATCAGCC 204047 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | || || ||||| ||||| ||| | || ||||| ||||| ||| || Sbjct 204048 AGCGTTCTGCCATCTTCGAGCTGCTTACCTGCAAAGATTAGTCTTTGCTGGTCCGGAGGG 204107 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| ||||| ||| || | | ||| || || | || | Sbjct 204108 ATGCCTTCTTTGTCTTGGATTTTGGCTTTAACATTGTCGATTGTGTCTGAACTTTCGACT 204167 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| || || || || || || ||||| || |||||||| Sbjct 204168 TCCAAAGTAATCGTCTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 204214 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| ||| | | ||||| || | || |||||||||||||| || ||||| | Sbjct 203758 TTCCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAATCGG 203817 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | |||| | | || || ||||| ||||| ||| | || ||||| ||||| || | Sbjct 203818 CAAGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGGTCTGGAG 203877 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| |||||| || || | | ||| || || | || Sbjct 203878 GGATACCTTCTTTGTCCTGGATTTTCGCCTTGACATTGTCGATTGTGTCTGAACTTTCAA 203937 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || || || || || || || || || ||||||||||| Sbjct 203938 CTTCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCAT 203986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||||| | |||| || | || ||||||||||| || || ||||| | Sbjct 210717 TTCCTCCCCTCAACCGCAGTACCAAATGAAGAGTCGACTCCTTTTGGATGTTATAATCGG 210776 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || |||||||| ||||| ||| | || | ||||||||| || | Sbjct 210777 CAAGCGTCCTACCATCTTCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCGGGTG 210836 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| |||||| || || | | ||| ||| || | ||| Sbjct 210837 GGATTCCTTCTTTGTCTTGGATTTTCGCCTTAACATTGTCGATAGTGTCCGAACTCTCAA 210896 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || || || || || || || |||||||| |||||||| Sbjct 210897 CTTCTAAAGTGATTGTCTTTCCGGTCAATGTCTTGACAAAGATTTGCAT 210945 >seq582 Length=2128859 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || || ||||| || |||| || | | |||||| Sbjct 298284 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCCTCC 298225 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | |||||||||||||| ||| ||| | |||||| ||||| | Sbjct 298224 AGCTGCTTTCCGGCAAATATAAGTCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 298165 Query 18953 ATTTT 18957 ||||| Sbjct 298164 ATTTT 298160 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| ||||| ||||| || |||| || | ||||||| Sbjct 299196 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGGCCGTCCTCA 299137 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || | || ||||||||||| || ||| | ||||| ||||| Sbjct 299136 AGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 299077 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | || ||| |||| |||| ||||||||| || Sbjct 299076 ATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTAATGGTCTTT 299017 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||| ||||| ||||| Sbjct 299016 CCAGTCAAGGTCTTGACGAAAATCTGCAT 298988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || || ||||| || |||| || | |||||||| Sbjct 298512 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGGCCGTCCTCC 298453 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || | |||||||||||||| ||| || | ||||| ||||| Sbjct 298452 AGCTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGG 298393 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | ||| || ||| | ||| || | ||| ||||| || Sbjct 298392 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTCTCGACCTCAAGGGTTATGGTCTTT 298333 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || |||||||| || ||||| Sbjct 298332 CCGGTGAGGGTCTTGACAAAGATCTGCAT 298304 >seq310 Length=2395884 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||||| || |||| || | ||| ||||||||||| ||||| ||||| || Sbjct 1997430 CCGCCTCTCAACCGCAAAACCAGATGAAGCGTCGACTCCTTTTGGATATTATAATCTGCA 1997371 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || ||||| ||||| ||| | || | | ||||| || || Sbjct 1997370 AGTGTCCTCCCATCTTCGAGCTGCTTACCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 1997311 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||||||| || || | | ||| || || | || Sbjct 1997310 ATACCTTCCTTGTCTTGAATTTTCGCCTTCACATTGTCGATCGTGTCTGAACTTTCAACC 1997251 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||||| || || ||||| ||||||||||| ||||| Sbjct 1997250 TCCAGTGTAATGGTTTTTCCGGTCAAAGTCTTGACAAAAATCTGCAT 1997204 >seq149 Length=2637241 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| ||||| ||||| || || | || | |||||||||||||||| || Sbjct 721957 GTGGATTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGGCCGTCCTCCAGCTGTTTTCCG 721898 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||||||| || | || || ||||| || ||| || Sbjct 721897 GCGAAGATGAGGCGCTGCTGATCCGGCGGGATACCTTCCTTGTCCTGGATCTTCGCCTTG 721838 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || ||| |||| ||||| || || ||||| || |||| ||| Sbjct 721837 ACATTGTCGATGGTGTCGGAGCTCTCCACTTCGAGAGTGATTGTTTTTCCGGTTAGGGTT 721778 Query 19025 TTGACAAAAATTTGCATTTT 19044 || || || ||||||||||| Sbjct 721777 TTCACGAAGATTTGCATTTT 721758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414561623635528