Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq310 113 3e-20 seq2135 102 6e-17 seq2167 89.7 4e-13 >seq310 Length=2395884 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | || |||| ||| ||||| ||| ||||| ||||||||||| | Sbjct 1997430 CCGCCTCTCAACCGCAAAACCAGATGAAGCGTCGACTCCTTTTGGATATTATAATC-TGC 1997372 Query 43955 AATTGACG-CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || | | |||| || | || || |||||||| ||||| ||||||||||| |||| Sbjct 1997371 AAGTGTCCTCCCATCTTCGAGCTGCTTACCTGCAAAGATCAAACGTTGCTGGTCTGGAGG 1997312 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| |||||| || || | | | || |||| || || Sbjct 1997311 AATACCTTCCTTGTCTTGAATTTTCGCCTTCACATTGTCGATCGTGTCTGAACTTTCAAC 1997252 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| ||||| |||||||| ||||| || |||||| Sbjct 1997251 CTCCAGTGTAATGGTTTTTCCGGTCAAAGTCTTGACAAAAATCTGCATG 1997203 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| ||||| | || || | ||| || || ||| || || ||||| ||||| Sbjct 1996974 CCTCCCCTCAAACGCAAAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCC 1996915 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | | |||| || | |||||| |||||||||||||| | |||||||| |||| Sbjct 1996914 AAGGTCCTCCCATCTTCGAGTTGTTTGCCTGCAAATATCAATCTCTGCTGGTCTGGAGGA 1996855 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || || || ||| |||||| ||||| || ||| || |||| || || Sbjct 1996854 ATTCCCTCCTTGTCTTGAATTTTCGCCTTGACGTTATCAATGGTGTCTGAACTTTCAACC 1996795 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| ||||| |||||||| || || || |||||| Sbjct 1996794 TCCAATGTAATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGCATG 1996747 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| ||| || || ||||||||||| | |||||||| |||| | || || | Sbjct 1996676 CATCTTCCAGTTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCT 1996617 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||||||| ||||| | ||| || |||| || || || | |||| Sbjct 1996616 TATCTTGAATTTTTGCCTTGACATTGTCAATGGTGTCTGAGCTTTCGACTTCAAGGGTAA 1996557 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || ||||| | || |||||||| ||||||||| Sbjct 1996556 TTGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCATG 1996519 >seq2135 Length=1067647 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT-CGTT 43953 ||||| ||||| || | |||||| || || ||| ||| ||||||||||| || | || Sbjct 902959 CCTCCCCTCAACCTCAGCACCAAGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGCC 902900 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || |||| ||||| || || |||||||| |||| || ||||||||| | || Sbjct 902899 AAAGTG-CGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGG 902841 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||| || |||||| | ||| || || | |||||| Sbjct 902840 GATTCCTTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCAATCGTGTCGGAGCTCTCCAC 902781 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || | |||||| ||||| || ||||| Sbjct 902780 CTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCAT 902733 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| ||||| || ||||| ||||||| ||||||||| | || | || || | Sbjct 903117 CATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCT 903058 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || |||||| | ||| || || | |||||| || | || | Sbjct 903057 TATCCTGAATCTTAGCTTTGACGTTGTCAATGGTGTCCGAACTCTCCACCTCCAAAGTGA 902998 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || ||||||||||||||||| ||||| Sbjct 902997 TGGTCTTACCAGTCAAAGTCTTCACAAATATCTGCAT 902961 >seq2167 Length=1051226 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||||| | ||||||||| || || ||| |||||||| ||||||||| Sbjct 203760 CCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAATCGGCA 203819 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | || || || ||||| |||| | ||||||||| |||| Sbjct 203820 AGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGG 203879 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||| || ||||| ||||| | | | || |||| || || Sbjct 203880 ATACCTTCTTTGTCCTGGATTTTCGCCTTGACATTGTCGATTGTGTCTGAACTTTCAACT 203939 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || || ||||| || || |||||||| Sbjct 203940 TCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCAT 203986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354768035639376