Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2135 84.2 2e-11 seq1098 84.2 2e-11 >seq2135 Length=1067647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | ||||||| |||||| || || || || || ||||| || ||||| || || Sbjct 902959 CCTCCCCTCAACCTCAGCACCAAGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGCC 902900 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||| ||||| || || || ||| | || |||||||| || || || Sbjct 902899 AAAGTGCGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 902840 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||| ||||| ||| || ||| || | | ||| | ||| || | ||| Sbjct 902839 ATTCCTTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCAATCGTGTCGG-AGCTCTCCAC 902781 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || || | || ||||||||||| ||||| Sbjct 902780 CTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCAT 902733 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 19993 CCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA 20052 ||| | |||||| || || || ||| ||||| |||||||||||| | | ||| | Sbjct 902264 CCTGAGCACCAAGTGAAGAGTGCTTTCCTTTTGGATGTTGTAATCGGCAAGAGTACGACC 902205 Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112 ||| ||||| || || || ||| |||| | |||||| ||||| ||| | ||||| || Sbjct 902204 ATCCTCCAACTGCTTCCCTGCAAAAATCAACCTCTGCTGATCCGGGGGAATCCCTTCCTT 902145 Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAA 20171 ||| ||| || ||| || | ||| || ||| || | || |||| ||||| Sbjct 902144 GTCTTGAATCTTGGCTTTGACGTTATCAATAGTGTCG-GAGCTCTCAACCTCCAAGGTAA 902086 Query 20172 TGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || || || | || |||||||| || ||||| Sbjct 902085 TGGTCTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 902049 >seq1098 Length=1756062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || |||||| |||| || | | |||||| || | || || || ||||||||||| || Sbjct 778440 TTGATCATTGTTCCACCCCTCAGCCTCAAAACGAGGTGAAGGGTCGATTCTTTTTGGATA 778381 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | |||||| || ||||| || ||| | || |||||||| Sbjct 778380 TTGTAATCTGCCAAAGTTCTGCCATCTTCTAACTGTTTACCAGCAAATATCAGCCTCTGC 778321 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 778320 TGGTCAGGAGGTATTCCTTCTTTGTC 778295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419575888453572