Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq149 111 1e-19 seq2135 96.9 3e-15 seq582 93.3 4e-14 seq310 93.3 4e-14 >seq149 Length=2637241 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || |||||| ||||| ||||||||||| || || || || ||||||||||||| Sbjct 721963 TGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGGCCGTCCTCCAGCTGT 721904 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| ||| | || |||||||||| || ||| Sbjct 721903 TTTCCGGCGAAGATGAGGCGCTGCTGATCCGGCGGGATACCTTCCTTGTCCTGGATCTTC 721844 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| |||| |||| |||| || || ||||| ||||| Sbjct 721843 GCCTTGACATTGTCGATGGTGTCGGAGCTCTCCACTTCGAGAGTGATTGTTTTTCCGGTT 721784 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTGTCTTGAT 48737 || |||||||| || || ||||| | | ||||| Sbjct 721783 AGGGTTTTCACGAAGATTTGCATTTTCTTTTGAT 721750 >seq2135 Length=1067647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | |||||| | ||| || ||||| ||| |||||||||||| ||||| || ||| Sbjct 902959 CCTCCCCTCAACCTCAGCACCAAGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGCC 902900 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||||| |||||| || | | || | | |||||| ||| || Sbjct 902899 AAAGTGCGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 902840 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACTC 48675 | | ||||||||| ||| || ||| | |||| | || || |||| ||| Sbjct 902839 ATTCCTTCCTTGTCTTGAATCTT-GGCT---TTGACGTTGTCAATCGTGTCGGAGCTCTC 902784 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | ||| | || ||||| || || |||||||| || ||||||||||||||| Sbjct 902783 CACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCATC 902732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | || ||| | ||| || ||||| ||||| |||||||| ||||||||||| | | Sbjct 902275 CCGCCCCTCAGCCTGAGCACCAAGTGAAGAGTGCTTTCCTTTTGGATGTTGTAATC-GGC 902217 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | ||||||| |||||| || | |||| || | |||||||||| || Sbjct 902216 AAGAGTACGACCATCCTCCAACTGCTTCCCTGCAAAAATCAACCTCTGCTGATCCGGGGG 902157 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | | ||||||||| ||| || ||| | |||| | || || |||| || Sbjct 902156 AATCCCTTCCTTGTCTTGAATCTT-GGCT---TTGACGTTATCAATAGTGTCGGAGCTCT 902101 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||| | || ||||| || || |||||||| || ||||| |||||||| Sbjct 902100 CAACCTCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 902049 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | || ||| | ||| || ||||| |||||||||||||| ||||||||||| || Sbjct 902503 CCACCCCTCAGCCTGAGCACCAAGTGAAGAGTGCTCTCCTTTTGGATGTTGTAATCCGCA 902444 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | || || |||||||| || | | || || | |||||| ||| || Sbjct 902443 AGAGTG-CGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGGGG 902385 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || |||| | | | | ||||| |||| ||| Sbjct 902384 AATGCCCTCCTTGTCCTGTATCTT-AGCTTTAACGTTGTCAATGGTGTCGGAGCTCTCGA 902326 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || || |||||||| || ||||||||||||||| Sbjct 902325 CCTCTAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCATC 902276 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | || ||| | || || ||||| |||||||||||||| ||||||||||| | | Sbjct 902731 CCACCCCTCAGCCTGAGAACCAAGTGAAGAGTGCTCTCCTTTTGGATGTTGTAATC-GGC 902673 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | ||||||| |||||| || | | || | | || || ||| || Sbjct 902672 AAGAGTACGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTTTGTTGGTCCGGTGG 902613 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || |||| | | || || |||| ||| Sbjct 902612 GATTCCTTCCTTGTCTTGAATCTTGGCTTTGACATTATCAATAGTGTCGGAGCTCTCAAC 902553 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || ||||||||||| || ||||||||||||||| Sbjct 902552 CTCCAAGGTAATGGTCTTCCCGGTGAGAGTCTTGACAAAAATCTGCATC 902504 >seq582 Length=2128859 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| |||||||| || |||||||||||||||| ||| || | Sbjct 291351 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 291292 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | | |||||| ||| || | || |||||||||| || || ||| | | Sbjct 291291 GATCAGCCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 291232 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | ||| ||||| || ||||| || |||||||| || || Sbjct 291231 GTCG--ATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTG 291174 Query 48713 ACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 291173 ACAAAGATCTGCAT 291160 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| |||||||| || |||||||||||||||| || || | Sbjct 298495 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAA 298436 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | | |||||| ||| || | | ||||||||| || || ||| | | Sbjct 298435 GATAAGTCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 298376 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| | ||| ||| | |||||||| || |||||||| || || Sbjct 298375 GTCG--ATGGTGTCGGAACTCTCGACCTCAAGGGTTATGGTCTTTCCGGTGAGGGTCTTG 298318 Query 48713 ACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 298317 ACAAAGATCTGCAT 298304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || ||||| || | |||||||||||||| ||| | | Sbjct 298267 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAA 298208 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| ||| || | | ||||||||| |||||| ||||| | Sbjct 298207 TATAAGTCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTGACATT 298148 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||| ||| | || || || || |||||||| || ||||| Sbjct 298147 ATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTAATCGTCTTTCCGGTGAGGGTCTTCAC 298088 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 298087 AAAGATCTGCAT 298076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| ||||||||||| || ||||| || ||||||| Sbjct 299196 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGGCCGTCCTCA 299137 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || | | |||||| || || | || ||||||||| Sbjct 299136 AGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 299077 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | ||||| |||| |||| ||||| || ||||| || Sbjct 299076 ATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTAATGGTCTTT 299017 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || || || ||||||||||| Sbjct 299016 CCAGTCAAGGTCTTGACGAAAATCTGCAT 298988 >seq310 Length=2395884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | ||||| || || | |||||| || ||||||||| || || ||||| || Sbjct 1997430 CCGCCTCTCAACCGCAAAACCAGATGAAGCGTCGACTCCTTTTGGATATTATAATCTGC- 1997372 Query 48560 AATTGTCG-CTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || |||| | | || || ||||||||||| | | || ||||| ||||| || || Sbjct 1997371 AAGTGTCCTCCCATCTTCGAGCTGCTTACCTGCAAAGATCAAACGTTGCTGGTCTGGAGG 1997312 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||||||| ||| | | | || || || | | || Sbjct 1997311 AATACCTTCCTTGTCTTGAATTTTCGCCTTCACATTGTCGATCGTGTCTGAACTTTCAAC 1997252 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| |||||||| ||||| | ||| || |||||||||||||| Sbjct 1997251 CTCCAGTGTAATGGTTTTTCCGGTCAAAGTCTTGACAAAAATCTGCAT 1997204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| ||| || | Sbjct 613349 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 613408 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| ||| | | |||||||||| || || ||| | | Sbjct 613409 GATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 613468 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || || |||| || || ||| | |||||| || || || || || |||||| Sbjct 613469 GTCG--ATCGTGTCGGAGGATTCTACCTCCAGTGTTATTGTCTTGCCCGTTAGGGTTTTC 613526 Query 48713 ACAAAAATCTGCATC 48727 || || ||||||||| Sbjct 613527 ACGAAGATCTGCATC 613541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421239843594212