Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq149 158 2e-34 seq1581 141 1e-29 seq1481 134 2e-27 seq2205 129 9e-26 seq2143 125 1e-24 seq1286 116 6e-22 seq2119 109 9e-20 seq582 109 9e-20 >seq149 Length=2637241 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || |||| |||||||| |||||||| ||||| |||||| Sbjct 1984610 GCAAAGCGCCACCGCAAAGTGCTGAGAGACAACATCCAGGGAATCACAAAGCCGGCTATC 1984551 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| ||||| ||||| || || | |||| || |||| Sbjct 1984550 CGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGACA 1984491 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||||||||| ||| |||||||| ||| || | ||| |||||| Sbjct 1984490 CGTGGCGTCCTCAAGATCTTCCTTGAGAACGTTATCCGTGACGCCGTTACCTACACCGAG 1984431 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || || || || | ||||| |||||||||| ||||| | || ||| Sbjct 1984430 CACGCTCGCCGCAAAACCGTGACGGCGATGGACGTCGTCTATGCCTTGAAGAGGCAGGGC 1984371 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 1984370 CGAACTCTCTACGGTTTCGGTGGTTAA 1984344 Score = 149 bits (164), Expect = 1e-31 Identities = 181/247 (73%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||| ||||| ||||||||||||||||| ||||||||| |||||||| | ||||||||| Sbjct 1075253 GATAATATCCAGGGAATCACCAAGCCAGCCATCCGTCGTTTGGCTCGTAGGGGTGGAGTC 1075312 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| |||| || ||||||| || | || Sbjct 1075313 AAGCGTATCAGCGGGCTTATCTACGAGGAGACACGTGGCGTCCTGAAGATATTTTTGGAG 1075372 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| ||| || || || |||||||||||| || || || || ||| || Sbjct 1075373 AATGTTATCCGTGACGCCGTCACATACACCGAGCACGCTCGCCGGAAAACCGTGACCGCC 1075432 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| |||| | || || |||| | || || || || ||| | Sbjct 1075433 ATGGATGTGGTTTATGCGCTGAAGAGGCAGGGACGTACTCTCTACGGATTCGGCGGTTGA 1075492 Query 16700 TCTTCTA 16706 | ||||| Sbjct 1075493 TTTTCTA 1075499 >seq1581 Length=1600752 Score = 141 bits (156), Expect = 1e-29 Identities = 194/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| || ||||| ||||| || ||| Sbjct 1455774 GCAAAGCGCCACCGCAAAGTGCTCCGCGACAACATCCAGGGCATCACAAAGCCGGCCATC 1455833 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||| | || || || ||| | | |||||| |||||||||||| Sbjct 1455834 CGCCGTCTGGCTCGTAGGGGCGGCGTGAAGAGAATAAGCGGATTGATCTATGAAGAGACA 1455893 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||||| ||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 1455894 CGTGGCGTGCTGAAGATATTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGAG 1455953 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || || || || ||||||| | || ||||| | || | || ||| Sbjct 1455954 CACGCTCGCCGCAAAACAGTAACTGCCATGGACGTGGTTTATGCTCTCAAGAGGCAGGGC 1456013 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 |||| |||| || || || ||| || || Sbjct 1456014 CGTACTCTTTACGGGTTCGGTGGTTGATTTT 1456044 >seq1481 Length=1609824 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| |||||||| ||| ||||||| | || || ||| Sbjct 905833 GATAACATCCAGGGCATCACCAAGCCGGCTATCCGCCGTTTGGCTCGCAGAGGCGGCGTC 905892 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| |||| || ||||||||||||| || Sbjct 905893 AAGCGTATCAGCGGCCTCATCTACGAGGAGACACGTGGCGTCCTGAAGATCTTCCTTGAG 905952 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || | || |||||||||||| || || || ||||| || Sbjct 905953 AACGTCATCCGCGACGCCGTTACTTACACCGAGCACGCTCGCCGGAAAACCGTCACGGCC 906012 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| |||| || || | || | || ||||||| | ||||| || || |||| Sbjct 906013 ATGGATGTCGTTTACGCTCTCAAGAGGCAGGGCCGTACTCTCTATGGATTCGGTGGTTA 906071 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | ||| | || |||||||| || ||||| ||||| ||||| Sbjct 1280497 CGCAAAGCGGCACCGTAAGGTTCTGAGGGACAACATCCAGGGCATCACTAAGCCGGCTAT 1280438 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| | ||||| || ||||| || ||| | |||| || |||| Sbjct 1280437 TCGGCGTCTGGCTCGCAGGGGTGGCGTGAAGCGAATCAGTGGGCTCATCTACGAGGAGAC 1280378 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | |||||||||||| ||| || |||| || || || ||| ||||| Sbjct 1280377 ACGTGGCGTTCTCAAGATCTTCCTCGAGAATGTCATCCGCGACGCCGTCACCTACACCGA 1280318 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||| || | |||||| | || ||||| | || | || || Sbjct 1280317 GCACGCCCGCCGCAAGACTGTGACGGCGATGGATGTTGTTTATGCCCTCAAGAGGCAGGG 1280258 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | ||||||| || || ||||| Sbjct 1280257 CCGAACTCTTTATGGATTCGGCGGTTAA 1280230 >seq2205 Length=14675 Score = 129 bits (142), Expect = 9e-26 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||||||||| || ||||| || ||||| | | || Sbjct 9103 CTCCGCGACAACATCCAAGGGATCACCAAGCCCGCCATCCGCCGCCTGGCCAGAAGGGGC 9162 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || || |||| || |||| |||| || | |||||||| Sbjct 9163 GGCGTCAAGCGAATCTCCGGGCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTT 9222 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| ||||||| | || ||||||||||||| | |||||||| Sbjct 9223 TTGGAGAACGTGATCCGTGATGCTGTTACGTACACCGAGCACGCTAGGAGGAAGACTGTT 9282 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || |||||||| | || ||||| |||| Sbjct 9283 ACTGCCATGGATGTGGTTTATGCTCTGAA 9311 >seq2143 Length=1161279 Score = 125 bits (138), Expect = 1e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||||||||| || ||||| || || || | | || Sbjct 766470 CTCCGCGACAACATCCAAGGGATCACCAAGCCCGCCATCCGCCGCCTTGCCAGAAGGGGC 766529 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || || |||| || |||| |||| || | |||||||| Sbjct 766530 GGCGTCAAGCGAATCTCCGGGCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTT 766589 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| ||||||| | || ||||||||||||| | |||||||| Sbjct 766590 TTGGAGAACGTGATCCGTGATGCTGTGACGTACACCGAGCACGCTAGGAGGAAGACTGTT 766649 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || |||||||| | || ||||| |||| Sbjct 766650 ACTGCCATGGATGTTGTTTATGCTCTGAA 766678 >seq1286 Length=4106301 Score = 116 bits (128), Expect = 6e-22 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||||||||| ||||||||||| || || || || || || || ||||| Sbjct 870686 TCTCCGGGATAACATCCAAGGCATCACCAAGCCTGCGATTCGCCGCCTTGCCCGCCGTGG 870745 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| | || | |||| || |||| ||| | ||| |||||||||| Sbjct 870746 CGGCGTTAAGCGCATAAGCGGCCTCATCTACGAGGAGACTCGCGGCGTTCTGAAGATCTT 870805 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| ||| |||| || || || ||| ||||||||||| || ||||| || Sbjct 870806 TTTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGGAAGACGGT 870865 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| ||||||| | ||||| || | || | || ||||| Sbjct 870866 CACCGCCATGGACGTTGTCTACGCGCTCAAGAGGCAGGGCCG 870907 >seq2119 Length=3478628 Score = 109 bits (120), Expect = 9e-20 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| |||||||| | | || Sbjct 2950468 CTCCGTGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGTCTGGCGAGGAGAGGC 2950527 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || | || || |||| | | |||| ||||||| || Sbjct 2950528 GGAGTGAAGAGAATCAGCGGCCTGATTTACGAGGAGACCAGAGGTGTTCTGAAGATATTT 2950587 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||||||| || || || ||| ||||||||||| | | ||||| ||| Sbjct 2950588 TTGGAGAACGTTATCAGAGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACCGTC 2950647 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||| |||||||| | |||||||| | || | || ||||||| Sbjct 2950648 ACCGCCATGGATGTTGTCTATGCTCTCAAGAGGCAGGGCCGTA 2950690 >seq582 Length=2128859 Score = 109 bits (120), Expect = 9e-20 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||| ||||| || ||||| || || || || || || || || Sbjct 1015748 GACAACATCCAGGGCATCACGAAGCCGGCGATCCGCCGCCTCGCGCGGCGCGGCGGCGTG 1015807 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| || |||| || | ||| ||||||| || | || Sbjct 1015808 AAGCGCATCAGCGGCCTCATCTACGAGGAGACGCGCGGCGTTCTGAAGATATTTTTGGAG 1015867 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || ||| ||||||||||| || |||||||||||| || Sbjct 1015868 AACGTGATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGGAAGACTGTCACCGCC 1015927 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || | || | || ||||| | | || ||||| ||| ||||| Sbjct 1015928 ATGGATGTTGTTTACGCGCTCAAGAGGCAGGGCCGCACTCTGTACGGTTTCGGAGGTTAA 1015987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073177552916