Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1832 214 2e-50 seq513 140 4e-28 seq528 104 3e-17 seq1942 82.4 9e-11 >seq1832 Length=4053948 Score = 214 bits (236), Expect = 2e-50 Identities = 324/459 (71%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 171972 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGG 172031 ||||| || ||||| || || |||| | || | | | ||| | ||||||| |||||| Sbjct 887143 TTAACGGCCGCAGTTTCCACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGG 887202 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 || ||||| |||||||||||| || || |||| |||||||||||| || |||| ||| Sbjct 887203 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 887262 Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 172151 || || | ||||| | || ||||| |||||||||||| | | || |||||| |||| Sbjct 887263 GTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCT 887322 Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAG---CAGTTATTG-CAGT 172207 || |||| | || ||||| || ||| | ||||| || | || || ||| | Sbjct 887323 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTT 887382 Query 172208 ATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTC 172267 || | | | || || || |||||| |||| ||| | |||||||||| |||||| Sbjct 887383 GTTTATG----TATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACCTAG 887438 Query 172268 ATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAAC 172327 |||||| | ||||| || ||||| | || | || | || || || || ||| || Sbjct 887439 TTTTGGTATAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 887498 Query 172328 TCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGC 172387 | || ||||||||||||||||| || || ||| || | || | || || ||||| || Sbjct 887499 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGC 887558 Query 172388 CATACATGGTGCAACAGTACAGAACACATTGTATGAAGA 172426 || |||||||| || ||| | || || || | |||||| Sbjct 887559 TATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGA 887597 Score = 214 bits (236), Expect = 2e-50 Identities = 324/459 (71%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 171972 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGG 172031 ||||| || ||||| || | |||| | || | | | ||| | ||||||| |||||| Sbjct 906898 TTAACGGCCGCAGTTTCCAATCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGG 906957 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 || ||||| |||||||||||| || || |||| |||||||||||| || |||| ||| Sbjct 906958 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 907017 Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 172151 || || | ||||| | || ||||| |||||||||||| | | || |||||| |||| Sbjct 907018 GTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCT 907077 Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAG---CAGTTATTG-CAGT 172207 || |||| | || ||||| || ||| | ||||| || | || || ||| | Sbjct 907078 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTT 907137 Query 172208 ATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTC 172267 || | | | || || || |||||| |||| ||| | |||||||||| |||| | Sbjct 907138 GTTTATG----TATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACTTAG 907193 Query 172268 ATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAAC 172327 |||||||| ||||| || ||||| | || | || | || || || || ||| || Sbjct 907194 TTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 907253 Query 172328 TCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGC 172387 || || ||||||||||||||||| || || ||| || | || | || || ||||| || Sbjct 907254 GCTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGC 907313 Query 172388 CATACATGGTGCAACAGTACAGAACACATTGTATGAAGA 172426 || |||||||| || ||| | || || || | |||||| Sbjct 907314 TATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGA 907352 Score = 161 bits (178), Expect = 1e-34 Identities = 239/339 (71%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 172494 GAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 172553 |||||||||||| ||| | || |||||| | || ||||| || || ||||| | || Sbjct 890375 GAAGAAACTTATTCCATGGTCACCGCTAACCGTTTTTGGTCCCAAATCTTTGGGGTTGCT 890434 Query 172554 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 172613 ||||| || ||| | | ||||| ||| ||||||| || ||||| || | ||| | ||| Sbjct 890435 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGG 890494 Query 172614 ACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCT 172673 | || | || | || || | || || ||||| | || || ||||| || ||| Sbjct 890495 ATGAGTGCTCTTGGAGTAGTCGGCTTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCT 890554 Query 172674 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTT 172733 || || || | ||||| ||||| || || ||||| || |||||||| || || ||||| Sbjct 890555 CAGGAAATTCGCGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACCAAAAATATTCTA 890614 Query 172734 CTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTG 172793 | || |||||||| | || |||||| | || ||||| || ||||| ||| || | Sbjct 890615 TTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 890674 Query 172794 TTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 ||||| || || || | ||||| || ||||| || ||| Sbjct 890675 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 890713 >seq513 Length=378260 Score = 140 bits (154), Expect = 4e-28 Identities = 211/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 171966 AACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 172025 || || ||||| || ||||| || || |||| | || | | | ||| | ||||||| Sbjct 131838 AATTTCTTAACGGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTA 131779 Query 172026 CTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 172085 |||||||| ||||| |||||||| ||| || || |||| |||||||||||| || ||| Sbjct 131778 CTATGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGG 131719 Query 172086 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAG 172145 | ||||| || | ||||| | || ||||| |||||||||||| | | || |||||| Sbjct 131718 ACTTTTGTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAG 131659 Query 172146 ATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCA 172205 |||| || |||| | || ||||| | ||| | ||||| || | ||||| Sbjct 131658 CTTGCTCGATCTGTTCAATTGCGACCTTATGATGCAATCGCATTTTCTGGTCCAATTGCT 131599 Query 172206 GTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCT 172265 || || | || || || |||||| |||| ||| | |||||||||| |||||| Sbjct 131598 GTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACCT 131539 >seq528 Length=404557 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 171966 AACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 172025 || |||||||| || ||||| || || ||| | | | | | ||| | |||| || Sbjct 134221 AATTTTTTAACGGCCGCAGTTTCTACTCCTACTACTAGTTTAGCGCATTCTTTATTATTA 134280 Query 172026 CTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 172085 |||||||| ||||| |||||||||||| || || |||| |||||||||||| || ||| Sbjct 134281 CTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGG 134340 Query 172086 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 172130 | ||||| || | |||| | || ||||| |||||||||||| Sbjct 134341 ACTTTTGTTGCTCTGTATGGTGCGTTCGGACTAATAGGTTTCATG 134385 >seq1942 Length=1573146 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 171966 AACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 172025 || || ||||| || ||||| || || ||| | | | | | ||| | |||| || Sbjct 1174798 AATTTCTTAACGGCCGCAGTTTCTACTCCTACTACTAGTTTAGCGCATTCTTTATTATTA 1174857 Query 172026 CTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 172085 ||||||| ||||| ||||||| |||| || || |||| |||||||||||| | ||| Sbjct 1174858 CTATGGGTTCCTGAAGCACAAGAAGATTTTACTCGTTGGTGTCAATTAGGTGGTTTGTGG 1174917 Query 172086 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 172130 | ||| | || | |||| | || ||||| |||||||||||| Sbjct 1174918 ACTTTTATTGCTCTGTATGGTGCGTTCGGACTAATAGGTTTCATG 1174962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570253032067680