Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2167 131 2e-25 seq149 102 8e-17 seq2047 96.9 3e-15 seq2135 95.1 1e-14 seq582 93.3 4e-14 seq310 89.7 5e-13 >seq2167 Length=1051226 Score = 131 bits (144), Expect = 2e-25 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | || ||||| ||||| |||||||| | ||||| | ||| | ||| ||| Sbjct 203986 ATGCAAATTTTCGTAAAGACATTGACTGGAAAGACAATCACTTTGGAAGTTGAAAGTTCA 203927 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | ||||| || || ||||||||||| || ||||| || Sbjct 203926 ---GACACAATCGACAATGTCAAGGCGAAAATCCAGGACAAAGAAGGTATCCCTCCAGAC 203870 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || |||||||| || | | ||| || || |||||||||| ||||| | ||| ||| Sbjct 203869 CAGCAAAGACTGATCTTTGCCGGTAAGCAGCTCGAAGATGGTAGAACACTTGCCGATTAT 203810 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||| || || ||| | ||| |||| ||| || | |||||||||| Sbjct 203809 AACATTCAAAAGGAGTCGACTCTTCATTTGGTGCTGCGATTGAGAGGAGGAA 203758 Score = 113 bits (124), Expect = 4e-20 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||||||||| | || || ||| | ||||| | || | ||| ||| Sbjct 204670 ATGCAGATTTTTGTAAAAACTCTTACCGGCAAAACAATCACTTTGGAGGTTGAAAGTTCA 204611 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | |||||| || || ||||| |||||||| ||||| || Sbjct 204610 ---GACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGGATCCCTCCAGAC 204554 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || |||||| | || | || || || ||||| ||||||| | ||| | || || || Sbjct 204553 CAGCAAAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGAACCCTCGCTGATTAC 204494 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || |||||||| ||| ||||||| ||||| |||||| | || |||| Sbjct 204493 AATATCCAGAAAGAATCGACTCTCCATCTTGTCCTAAGACTTCGTGGTGGAA 204442 Score = 109 bits (120), Expect = 5e-19 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TC 26824 |||||| | ||||| || || || |||||||| | ||||| | || | ||| || Sbjct 204443 AATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACAATCACTTTGGAGGTCGAAAGTTC 204384 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||| ||||| | || ||| || || |||||||||||||| ||||| || Sbjct 204383 A---GACACAATCGACAACGTTAAAGCCAAAATCCAAGACAAAGAAGGGATCCCTCCAGA 204327 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACT 26943 || |||||||| || | | ||| || ||||| ||||||| ||||| | | ||| | | Sbjct 204326 CCAGCAAAGACTGATCTTTGCCGGAAAGCAACTTGAAGATGGTAGAA-CATTGGCGGATT 204268 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 | ||||||||||| ||||| ||| ||||||| || Sbjct 204267 ACAACATTCAAAAGGAATCAACTCTCCATCTTGT 204234 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | || || || ||||| |||||||| |||| || | ||| | ||| ||| Sbjct 211401 ATGCAGATATTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTTGAAAGTTCA 211342 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | || ||| || ||| |||||||||||||| ||||| ||| Sbjct 211341 ---GACACTATCGATAATGTTAAAGCGAAAATTCAGGACAAAGAAGGGATTCCTCCGGAT 211285 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || |||||| | || | | || |||||||||||||||| ||| | || || || Sbjct 211284 CAGCAAAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGGCGAACCCTCGCGGATTAC 211225 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| ||||| | || || ||||| || ||| | || || Sbjct 211224 AATATCCAGAAAGAGTCTACACTACACCTTGTCCTAAGGCTTCGTGGTGG 211175 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | || || || ||||| |||||||| |||| || | ||| | ||| ||| Sbjct 204214 ATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCA 204155 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | || ||| || || ||||||||||| || ||||| || Sbjct 204154 ---GACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGAC 204098 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || |||||||| || | | || || || |||||||||| || |||| || || || Sbjct 204097 CAGCAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAG-AACGCTGGCTGATTA 204039 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| |||||||| ||| |||| || || || || ||| | || || Sbjct 204038 CAATATTCAGAAAGAATCGACTCTCCACCTTGTGCTAAGGCTTCGTGGTGG 203988 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| ||||| | || || || | ||||| | ||| | || | | | Sbjct 204898 ATGCAGATTTTTGTGAAAACTCTTACCGGGAAGACCATCACTCTTGAAGTCGAGAGCTCA 204839 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || ||||| | |||||| |||||| ||||| ||||| || ||||| || || Sbjct 204838 -GATACGATCGATAATGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCA 204780 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||| | || | | ||||| ||||||||||||| | ||| | || || || || Sbjct 204779 GCAAAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTCGCTGATTACAA 204720 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||||||||| |||| || ||||| || ||| | || || Sbjct 204719 TATCCAGAAAGAATCTACACTCCACCTTGTCCTAAGGCTTCGTGGTGG 204672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||||||||| | ||||| || ||||||| |||| | || | | | Sbjct 211629 ATGCAGATATTTGTAAAAACTCTTACTGGTAAGACGATCACTCTCGAGGTCGAGAGCTCA 211570 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||| | || | ||||| || ||| || || ||||| || ||||| ||||| Sbjct 211569 -GATACCGTAGACAACGTCAAGTCTAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCA 211511 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | | || |||||||||||||| | ||| | || || || || Sbjct 211510 GCAGAGGCTAATCTTTGCTGGGAAACAACTCGAAGACGGGCGAACCCTCGCGGATTACAA 211451 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||||||||| |||| || ||||| || ||| | || || Sbjct 211450 TATCCAGAAAGAATCTACACTCCACCTTGTCCTAAGGCTTCGTGGTGG 211403 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | || || || || || || ||||| |||| || | || | ||| ||| Sbjct 211173 ATGCAGATTTTCGTTAAGACGTTGACCGGAAAGACGATTACTTTGGAGGTTGAAAGTTCA 211114 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| || || | || ||| ||| || |||||||||||||| ||||| || Sbjct 211113 ---GACACAATTGATAATGTTAAAGCAAAAATCCAGGACAAAGAAGGGATCCCTCCGGAC 211057 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGT-CAGCGACT 26943 || || ||| | || | | || |||||||| ||||| | ||||| || | || |||| Sbjct 211056 CAGCAGAGATTGATCTTTGCTGGGAAACAACTTGAAGACGGTAGAACACTTGCA--GACT 210999 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 | ||||| ||||| || || ||| ||||||| || ||| Sbjct 210998 ACAACATCCAAAAGGAGTCGACTCTCCATCTTGTGCTG 210961 >seq149 Length=2637241 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||| ||||||||| | || || ||||| |||| |||||| | ||||| ||||| | || Sbjct 721754 AAAGAAAATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACAATCACTCTCGAAGTGGA 721813 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 |||||||||||| | ||||| ||||| ||||| ||||| || || || Sbjct 721814 GAGCTCCGACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGTATCCCGCC 721873 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 ||||| || | ||||| | || ||| ||||| || || || | | | | | ||| Sbjct 721874 GGATCAGCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGGACCTTAGCCGA 721933 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| |||||||| || ||||| || |||| || ||||| Sbjct 721934 CTACAACATTCAGAAGGAATCCACACTCCACCTCGTCCT 721972 >seq2047 Length=1241070 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| |||||||| || ||| | || | || ||| |||||| | ||| Sbjct 887324 GACAAAGAAGGCATACCGCCCGATCAGCAGAGATTGATATTCGCCGGTAAACAATTGGAA 887265 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | ||||| || || ||||| || || |||||||| || |||| || || || Sbjct 887264 GATG-GACGAACGTTGGCGGATTATAATATCCAGAAAGAATCGACGCTCCACCTTGTTCT 887206 Query 26981 GAGACTTAGAGGAGG 26995 |||||| || ||||| Sbjct 887205 GAGACTCAGGGGAGG 887191 >seq2135 Length=1067647 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || ||||| | |||||| |||| | ||| Sbjct 901593 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTGGAAAGCTCG 901652 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| |||||||| ||||| || || Sbjct 901653 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 901712 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| | || | | ||||||||||||||||| | | | | ||| || ||| Sbjct 901713 CAAAGGTTGATCTTTGCTGGCAAACAACTCGAAGACGGGCGCACTCTTGCCGATTACAAC 901772 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || ||||| |||| ||||||| | || ||||| || Sbjct 901773 ATTCAAAAGGAGTCTACCCTCCACTTGGTCCTCCGTCTCAGAGGGGG 901819 >seq582 Length=2128859 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||| ||||| | || || ||| | |||||| |||| | ||| ||| Sbjct 297848 ATGCAGATCTTTGTGAAAACTCTCACCGGCAAAACCATCACCCTCGAGGTGGAAAGCTCA 297907 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| ||||| ||||| || || || ||||| || Sbjct 297908 ---GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCGGAC 297964 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || ||||| | | ||||||||| || ||||| | | | | || |||||| Sbjct 297965 CAGCAGAGGCTCATCTTTGCCGGCAAACAGCTTGAAGACGGTCGCACACTCGCCGACTAC 298024 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||||| || || || || ||| |||| ||||||| |||| Sbjct 298025 AACATCCAGAAGGAGTCGACTCTCCACTTGGTCCTCCGACT 298065 >seq310 Length=2395884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || |||| |||||| | || || |||| | || | Sbjct 1996064 ATGCAGATATTTGTCAAGACTCTAACCGGAAAAACTATAACTCTCGAGGTCGAGAGTTCC 1996123 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | ||||| || || ||||| |||||||| || || || || Sbjct 1996124 GATACAATCGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGACCAG 1996183 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | || ||||||||||||||||||| |||| | | || || ||| Sbjct 1996184 CAAAGGCTAATCTTCGCTGGCAAACAACTCGAAGATGGCAGAACCCTTGCAGATTACAAC 1996243 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || ||||| |||| || ||||| Sbjct 1996244 ATCCAAAAGGAGTCTACCCTCCACCTTGTCCT 1996275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649164984640